Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2780 ATGCAAGCACTAAGTTCTTCACTCCCGGATTGCACTCGACAAGTGCCCAGATTCTCAATCAACGCCACTCCTCCAAATTTTGCATCTTTTCTGTCCACCTTGAGCCCCTCCAAGGTTGGAATCAGATTGAGTTTGAGTTGTGGTTGTGGGGTTTACAAACCACATAGGAGGAGTAGGTGTGATGGTTTTGGGGTCCAGTGTGCAGCCTCCAATGGAGAAAATGATGATGGGTTTTACATCAGAAGATGTGTAGAGCTTGCAAGGAAGGCTGTTGGGTTTACCAGCCCCAATCCACTGGTAGGGTGTGTTATTGTAAAGGATGGGAAAGTTGTTGGTGAAGGGTTCCACCCTAAAGCAGGCCAACCTCATGCTGAGGTGTTTGCTCTGAGAGATGCTGGTGATTTGGCACAAAGCGCGACAGCTTATGTGAGCTTGGAACCCTGTAACCATTTTGGTAGGACTCCACCTTGCACTGAAGCTCTAATTAAAGCCAAAGTGAAAAAGGTTGTTGTTGGGATGGTGGATCCAAATCCCATAGTTGCCTTCAAAGGAGTGGAAAGATTGAGAGATGCAGGAATTGAAGTTGTTGTGGGTGTAGAGGAAGAACTGTGCAAGAGCCTCAACGAGGCCTATATTCATCGCATGTTGACCGGAAAGCCTTTCCTTACTCTGAGATATTCTCTTTCTGTTAATGGAAACCTTTTGGACTTACTTGGGAATGGAGTTACAGACTGTGGTGGATACTATTCAAGGCTATTACAAGAATATGATGCAGTGGTAATCTCTTCTTCCTTATTCAGTGAAAATTTGTCAGTACCTGTATCTCAAGAACCTGGAGCAAACCAACCAATTTGGATTGTAATACATAAAGATCCTAGTTCTTCAAATCAAATTCCACTATCCATCAATGAAGTCACTGGCAAAGTGACAATCTTTACAGACAATAAAACAGCAACAGCTTCAGAAGTGGCTCAACAAGGAATTGAAACTGTAGCTCTTGATCTAATAAACCTGGATGTGATCTTGGATTATTGTAATCGTCAAGGATTGTGCAGTGTTCTGTTAGATGTTAGGGGGAGTTTCAGTGAGTTTGAAGAGCTTGTTAAGGAGGGTATCAAgaagaattatattaataaatttatcacagAAATTTTGCCAGTTTGGAATGGGTGCACTGAACCAGATCCTCTACAGACATTGAAGAGCTTAGAGCAAGGAGTAGAAGTGGTAAATTTGAAGTCAAAGGCCTCAGATCAGAGTGTTGTAATTGAGgggtattttaaattttag 1290 0.4155 MQALSSSLPDCTRQVPRFSINATPPNFASFLSTLSPSKVGIRLSLSCGCGVYKPHRRSRCDGFGVQCAASNGENDDGFYIRRCVELARKAVGFTSPNPLVGCVIVKDGKVVGEGFHPKAGQPHAEVFALRDAGDLAQSATAYVSLEPCNHFGRTPPCTEALIKAKVKKVVVGMVDPNPIVAFKGVERLRDAGIEVVVGVEEELCKSLNEAYIHRMLTGKPFLTLRYSLSVNGNLLDLLGNGVTDCGGYYSRLLQEYDAVVISSSLFSENLSVPVSQEPGANQPIWIVIHKDPSSSNQIPLSINEVTGKVTIFTDNKTATASEVAQQGIETVALDLINLDVILDYCNRQGLCSVLLDVRGSFSEFEELVKEGIKKNYINKFITEILPVWNGCTEPDPLQTLKSLEQGVEVVNLKSKASDQSVVIEGYFKF 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2780 429 Gene3D Cytidine Deaminase, domain 2 65 213 - -
Ssu4g2780 429 ProSiteProfiles Cytidine and deoxycytidylate deaminases domain profile. 74 196 IPR002125 -
Ssu4g2780 429 CDD Riboflavin_deaminase-reductase 80 192 - -
Ssu4g2780 429 PANTHER RIBOFLAVIN BIOSYNTHESIS PROTEIN PYRD, CHLOROPLASTIC 53 266 - -
Ssu4g2780 429 PANTHER CYTOSINE DEAMINASE FAMILY MEMBER 53 266 - -
Ssu4g2780 429 SUPERFAMILY Dihydrofolate reductase-like 220 427 IPR024072 -
Ssu4g2780 429 Gene3D Dihydrofolate Reductase, subunit A 214 427 IPR024072 -
Ssu4g2780 429 ProSitePatterns Cytidine and deoxycytidylate deaminases zinc-binding region signature. 123 161 IPR016192 GO:0008270|GO:0016787
Ssu4g2780 429 Pfam Cytidine and deoxycytidylate deaminase zinc-binding region 78 173 IPR002125 -
Ssu4g2780 429 SUPERFAMILY Cytidine deaminase-like 76 215 IPR016193 GO:0003824
Ssu4g2780 429 TIGRFAM eubact_ribD: riboflavin biosynthesis protein RibD 81 393 IPR004794 GO:0008835|GO:0009231
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2780 K11752 - gmx:100786393 718.383
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g2780 4 70866936 70869068 Ssu4g2780 4 70866936 70869068 ECH