Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2773 ATGAAGGTTTCTACCTCAATAGCATCCTTTGTTCTGATGTTGATTCTCCTTTCAACAAATTGTTTCTGTTCTGAAGTACAACAATGTCGTCCTAGTGGCAGAATCATAGGAAAGAAGCCCCCTCCTGGAAAATGCAACCAAGAGAATGATTCTGATTGTTGTGTACAAGGCAAGAAGTACACAACATACAAATGTTTTCCACCAGTGTCAAGCCACACAAAGGCCCAACTCACtctcaataattttcaaaaggatGGAGACGGAGGTGGCCCTTCAGAATGTGACAACAAGTACCATTCTGATGACACACCAGTGGTTGCACTTTCCACTGGTTGGTTCAACAATAGGAGTAGGTGCCTCCACAACATCACCATCAGTGCAAATGGCAAAAGCGTGGTGGCCATGGTGGTGGACGAGTGTGACTCTACCATGGGATGTGATCAAGACCATGATTATCAACCCCCTTGTTCCAACAACATTGTTGATGCCTCCAAGGCTGTGTGGAAAGCCTTAGGAGTGCCTCAAAATCAGTGGGGTGGATTGGAAATTACATGGTCTGCTGCTTAA 567 0.4392 MKVSTSIASFVLMLILLSTNCFCSEVQQCRPSGRIIGKKPPPGKCNQENDSDCCVQGKKYTTYKCFPPVSSHTKAQLTLNNFQKDGDGGGPSECDNKYHSDDTPVVALSTGWFNNRSRCLHNITISANGKSVVAMVVDECDSTMGCDQDHDYQPPCSNNIVDASKAVWKALGVPQNQWGGLEITWSAA 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2773 188 PANTHER LIPID TRANSFER PROTEIN 5 188 - -
Ssu4g2773 188 Gene3D - 73 187 IPR036908 -
Ssu4g2773 188 PANTHER RIPENING-RELATED PROTEIN 2-RELATED 5 188 IPR039271 -
Ssu4g2773 188 SUPERFAMILY Barwin-like endoglucanases 69 186 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2773 Ssu-Chr4 70770615 70771181 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2773 - - gmx:100785431 361.688
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g2773 4 70770615 70771181 Ssu4g2773 4 70770615 70771181 ECH
Ssu3g0750 3 18100295 18100684 Ssu4g2773 4 70770615 70771181 PCT