Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2770 ATGACGAACCGGAGAAAACCGGGGGAGGATAGAATTAGCGTACTACCGGACGACGTTCTGTGTCACATCCTTTCGTTCCTTGCGACCAAGGAAGCCATAGCTACGTCCTCGTTGTCCACCAGGTGGAGATTTCTGTGGAGCATGGTTCCGTCTCTTGACATCGAGTGCTCCAAACCAATTACGAGACCCCACGAGAGCGTCAGTGTATTCTTGGCTCTACGCAGAACAGAAAAGACCACAAGGTTTCGTCTTAAATGTAACAGCCGCGATTGTTGCTCACGCTACGCGGAAGAATGGGTCTCTGCAGTCACAGCGAGAAAAGTTGAACACGTGAACATCTCCCTGAGCACGAGCCGCACGGGCGTGCTCTCCTTCGCGGCCTTGTTCACTTGCACCGCAATGGTCACCTTGAACCTCGAGGGCTGCTTTGATCTCCGCGTTCCTTCTTCTGTTCGTCTCCCTAATCTCAAGACTTTGCACCTACACATAAACGGTGACGGCGTCGGTGTCAGGAGAATCATCTCCGGATCTCCGGCTCTTGAACTGTTTCTCCTGAAGCAGAGCCCGATTCCGGATCATTTCAACGAGGTGAAGATTGTGCGTAACTCCCCAGATATCCAATACTCTCAACGCAACTGGCTTTATGACCTTGTTGTGCGGAGTGACCGTGACTGTGATTTTATCTCAGACTACGTGGAGTATCGTTGGCCAAACGCGGTGAAGGCCAAGGTTTATATGAAGGTGTATGACGGTAATAAGCGTTTTGGCGCGAAACAAATTGTTACCGACATTCTCCAAAGACTGTGTGATGCTGAGTTTCTGTCTTTGGGTTATTTTGGGGAGGAGATGGAGCCTTCTACTCTTGATCTCCCACTGTTTAAGAATTTAGTTGAGTTACGTCTTTCTCTTAAAAGCGCTGACTCCTTGTTCATGGAACTTCCTGCCAAGTGTCCTAAGCTTAAAGTTCTTGAAGTTAATTTCGTGGACGATCGGAATAATATTAATCAGAGATGTCGATATCGTGTTAGTGGCGGAGCATGGGAGTCCGACCTATGA 1056 0.4886 MTNRRKPGEDRISVLPDDVLCHILSFLATKEAIATSSLSTRWRFLWSMVPSLDIECSKPITRPHESVSVFLALRRTEKTTRFRLKCNSRDCCSRYAEEWVSAVTARKVEHVNISLSTSRTGVLSFAALFTCTAMVTLNLEGCFDLRVPSSVRLPNLKTLHLHINGDGVGVRRIISGSPALELFLLKQSPIPDHFNEVKIVRNSPDIQYSQRNWLYDLVVRSDRDCDFISDYVEYRWPNAVKAKVYMKVYDGNKRFGAKQIVTDILQRLCDAEFLSLGYFGEEMEPSTLDLPLFKNLVELRLSLKSADSLFMELPAKCPKLKVLEVNFVDDRNNINQRCRYRVSGGAWESDL 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2770 351 PANTHER F-BOX/RNI SUPERFAMILY PROTEIN-RELATED 10 187 - -
Ssu4g2770 351 SMART fbox_2 15 55 IPR001810 GO:0005515
Ssu4g2770 351 SUPERFAMILY RNI-like 91 327 - -
Ssu4g2770 351 Pfam F-box domain 12 48 IPR001810 GO:0005515
Ssu4g2770 351 Gene3D Ribonuclease Inhibitor 71 340 IPR032675 -
Ssu4g2770 351 Gene3D - 2 52 - -
Ssu4g2770 351 SUPERFAMILY F-box domain 8 89 IPR036047 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2770 Ssu-Chr4 70735533 70736588 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2770 10 185 EF-hand Containing Proteins AT5G41840 34.328 1.13e-18 85.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2770 - - gmx:102659597 388.652