Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2740 atGAAGAAGCTCAATCTAATACTTAGCAAGTGCAAGAGCTTGTCAAGGCAGCTAGTAAGATCTTCATCATATAGTAGCCTGAGGTCCAAATTTGCTAAGGAAGACTTATGTGTAGGACATGGCATGCAAGAAGGTGAACATTATGAAACTATATTTGTTGGCAGCACAAGGAAACGGTATGTGATCAGCTCCAAGTATCTGAATCATCCTCTTCTGAAAGCTCTCATCAACAAGTCAAGGCAAAAGGGCAGTGATGAAAGTGTTTTGGTGGTCAACTGTGAGGTGGTTCTCTTTGATCATCTATTGTGGATGCTAGAAAATGCAGATCCTAAGTTTGGTTCTGATTCTTTGGAGGAATTGGCTGAACTCTATGTGATTTAA 381 0.4016 MKKLNLILSKCKSLSRQLVRSSSYSSLRSKFAKEDLCVGHGMQEGEHYETIFVGSTRKRYVISSKYLNHPLLKALINKSRQKGSDESVLVVNCEVVLFDHLLWMLENADPKFGSDSLEELAELYVI 126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2740 126 Pfam Auxin responsive protein 45 105 IPR003676 GO:0009733
Ssu4g2740 126 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 4 125 IPR003676 GO:0009733
Ssu4g2740 126 PANTHER EXPRESSED PROTEIN 4 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2740 Ssu-Chr4 70081720 70082100 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2740 50 107 Calmodulin-binding Proteins AT5G20810 38.333 1.12e-07 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2740 - - gmx:100527910 211.075