Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2732 ATGGCTACTACCACTTCTGCTTCGTTCGCTCGCTTCTCCGTTATCTCGAGACCTTCGTCCCATCCTCAATTTATCCTCTTCAACATCGCTCCTCGAACCGGAATCCCCCATTCCCGAAGCGGCGCGGCCCGGTTCAGGTGCTCGGCCGGCCAGACCGGGTTCTTCACGAAACTGGGGCGGTTGATAAAGGAGAAGGCGAAGAGCGATGTGGAGAAGGTCTTTTCGGGTTTCTCCAAGACCCGCAACAACCTCGCCGTCATCGACGAGCTTCTCCTATATTGGAACCTCTCCGACACCGACCGTGTCCTCGACGAACTCGAAGAGGCTCTTTTAATGTCTGATTTTGGGCCGAAAATCACCATTAAGATAGTGGAGAATTTGCGCGAGGACATATTTTCGGGGAAGCTTAAATCAGGGAGTGAGATAAAGGAAGCACTGAAGAGGAATGTTTTGGAATTGTTAACCTCCAAGGGGAGTAAAACTGAACTTCAACTTGGATTCAGGAAGCCAGCTGTAATAATGATAGTTGGTGTTAATGGTGGAGGGAAGACAACATCTTTGgGAAAGCTGGCCTATAGATTGAAGAATGAAGGGGCTAAGATATTGATGGCAGCTGGTGATACATTTAGAGCAGCTGCTAGTGATCAGTTGGAAATATGGGCTGAAAGGACTGGGTGTGAGATTGTTGTGGCTGAATCAGAGAAAGCAAAAGCATCATCAGTGCTTTCACGGGCtgtaaaaaagggaaaagagctTGGTTTTGATATTGTATTATGTGATACATCTGGGCGTTTACACACTAATTACAGCCTAATGGAAGAGTTGATTTCTTGTAAAAAGTCTGTTGCTAAAATCGTTCCTGGTGCACCTAACGAGATCCTACTGGTTCTGGATGGGACTACTGGTTTGAATATGTTGCCACAAGCGAGAGAATTCAATGATGTTGTGGGTGTTACTGGTTTAATTTTGACCAAACTGGATGGTTCTGCTAGAGGTGGCTGTGTgGTCAGCGTCGTTGATGAGCTTGGAATCCCTGTAAAATTTGTGGGTGTTGGTGAAGGTGTTGAAGACCTTCAACCCTTTGATGCGGAGGCCTTTGTCAATGCCATTTTTATGTAA 1119 0.4567 MATTTSASFARFSVISRPSSHPQFILFNIAPRTGIPHSRSGAARFRCSAGQTGFFTKLGRLIKEKAKSDVEKVFSGFSKTRNNLAVIDELLLYWNLSDTDRVLDELEEALLMSDFGPKITIKIVENLREDIFSGKLKSGSEIKEALKRNVLELLTSKGSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEIVVAESEKAKASSVLSRAVKKGKELGFDIVLCDTSGRLHTNYSLMEELISCKKSVAKIVPGAPNEILLVLDGTTGLNMLPQAREFNDVVGVTGLILTKLDGSARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFVNAIFM 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2732 372 SMART SRP54_N_2 73 154 IPR013822 GO:0005525|GO:0006614
Ssu4g2732 372 Gene3D - 162 372 IPR027417 -
Ssu4g2732 372 Pfam SRP54-type protein, helical bundle domain 99 148 IPR013822 GO:0005525|GO:0006614
Ssu4g2732 372 SUPERFAMILY Domain of the SRP/SRP receptor G-proteins 70 147 IPR036225 -
Ssu4g2732 372 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 167 370 IPR027417 -
Ssu4g2732 372 PANTHER BNAA04G26420D PROTEIN 27 371 - -
Ssu4g2732 372 SMART SRP54_3 170 372 IPR000897 GO:0005525|GO:0006614
Ssu4g2732 372 CDD FtsY 171 370 - -
Ssu4g2732 372 PANTHER SIGNAL RECOGNITION PARTICLE RECEPTOR SUBUNIT ALPHA 27 371 - -
Ssu4g2732 372 SMART AAA_5 169 342 IPR003593 -
Ssu4g2732 372 Gene3D - 60 161 IPR042101 -
Ssu4g2732 372 TIGRFAM ftsY: signal recognition particle-docking protein FtsY 99 371 IPR004390 GO:0006614
Ssu4g2732 372 Pfam SRP54-type protein, GTPase domain 170 371 IPR000897 GO:0005525|GO:0006614
Ssu4g2732 372 ProSitePatterns SRP54-type proteins GTP-binding domain signature. 345 358 IPR000897 GO:0005525|GO:0006614
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2732 Ssu-Chr4 69963642 69973275 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2732 K03110 - gmx:100791073 686.797