Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Ssu4g2729 | ATGGCAGCCAAATCAAGAACTCTGGAGCTCACGGTTTTATCCGCGGAGGGTCTCCACATAAGGGGAAAGCCGGCGAACAAGAACGTGTTCACGGTGGTTCGCGCGGAGTCGATAACGAGCCACGCGACGGCGATGACGAAGGGCAACAACGGGTTCCACTCGTGGAACGAGAAGTTCCTGGTGGAGCTTGGGGCGCACGCGAGGTGCGTGACGTTCGAAGTGAAGTGCAAGACGGGAACGGGAGTCAGAGACGTTGGCGTGGCGAGAATTGCGCTTTCGGATTTTCTGGGAGGGTTGGTGCCCGACCACTGCCTGCAGTTTTTGTGTTACAGGTTGAGGGACTGGGACGGGGGGGAAAACGGGATAGTTAATTTCTCCGTCAGGGTGGTGGCGCCGCCGTCAACCACCGCCGGTGGGCGTTGGGGGTTCGGCGCGGAGGCTGAGAATGATTGTTCGTCGTTGTCCATGGGAGTTGTTACTGGCATTCCTGTTTGGTGCAACAACTCGACAACTAGCACGAGCAATGTTTGA | 531 | 0.5763 | MAAKSRTLELTVLSAEGLHIRGKPANKNVFTVVRAESITSHATAMTKGNNGFHSWNEKFLVELGAHARCVTFEVKCKTGTGVRDVGVARIALSDFLGGLVPDHCLQFLCYRLRDWDGGENGIVNFSVRVVAPPSTTAGGRWGFGAEAENDCSSLSMGVVTGIPVWCNNSTTSTSNV | 176 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Ssu4g2729 | 176 | Gene3D | C2 domain | 5 | 128 | IPR035892 | - | |
| Ssu4g2729 | 176 | SUPERFAMILY | C2 domain (Calcium/lipid-binding domain, CaLB) | 7 | 132 | IPR035892 | - | |
| Ssu4g2729 | 176 | ProSiteProfiles | C2 domain profile. | 1 | 105 | IPR000008 | - | |
| Ssu4g2729 | 176 | PANTHER | BON1-ASSOCIATED-LIKE PROTEIN | 5 | 170 | - | - | |
| Ssu4g2729 | 176 | PANTHER | INGRESSION PROTEIN FIC1 | 5 | 170 | - | - | |
| Ssu4g2729 | 176 | CDD | C2_SRC2_like | 7 | 125 | IPR044750 | GO:0006952 | |
| Ssu4g2729 | 176 | Pfam | C2 domain | 7 | 98 | IPR000008 | - | |
| Ssu4g2729 | 176 | SMART | C2_3c | 7 | 104 | IPR000008 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Ssu4g2729 | Ssu-Chr4 | 69922520 | 69923050 | Dispersed/Wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Ssu4g2729 | - | - | gmx:102665635 | 246.128 |