Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2682 ATGGCGGACGCCGACCTCACCTCCCCGCTCCTCTCCTCCGACCACATCGTCGTCACCGTCCACTCCTCCGCCGCCGCCCCAGCCTCCGACGGCCCATTCCGCTTCCTCGGCTGCGACGACGAGTTGGCCGTGCCGCCGCCGCCCACGGTGGACCCCTTCCGCAATGGCACGGCGGCAGTGGAGGGGCTCTATGAGTGGGCCAAGACGGCGGCGTGCCTGCCGGTGGCGGTGCTGAGGCTGGCGCTCTTCGGGCTCTGTCTCGTGGTGGGGTACGTGGCGACGAGGATCGCGCTGGAAGGGTGGAAGGACAAGGAGAATCCGATGCCGAAGTGGAGGTGTAGGTTTATGTGGATCACGCGATTGTGCGCCAGATGCATTCTCTTCTCGTTTGGCTATCATTGGATAAAACGGAAAGGAAGACCTGCACCAAGGGAAGTTGCTCCAATAATTGTATCCAACCATGTATCTTATATTGAGCCTATCTTCTATTTCTATGAATTATTTCCCACCATTGTGGCATCTGAGTCTCATGACTCCATACCTTTTGTTGGCACCATTATTAGAGCAATGCAGGTCATATATGTTAACAGGTTCGAACCATCATCAAGGAAGCAGGCTGTCAGGGAAATAAAGAGAAGGGCCTCTTGCAATAAATTTCCTCGAGTACTATTATTTCCCGAGGGAACCACAACTAATGGCAGGAACCTTATCTCCTTCCAACTTGGTGCATTTATCCCTGGATACCCAATCCAGCCTCTAATTGTACGCTATCCACATGTGCACTTTGACCAATCCTGGGGTCATGTTTCTTTGGGAAAGCTTATGTTCAGGATGTTCACTCAATTTCACAACTTTTTTGAGGTAGAATATCTTCCTGTCATTTCACCCCTGGATGATAAGGAAACTGCTGTACATTTTCGGGAGAGGACTAGCCGTGCTATGGCAACTACAATGAATGTTGTCCAGACGGGACATTCTTATGGAGACATAATGCTTCATACGAAAGCACAAGAAGCAAAACAGGAAAACCCCTCGAGTTATATGGTTGAAATGGCCAAGGTGGAATCATTATTTCATATCAGCAGCATGGAAGCTGTGGACTTTCTGGATAAGTTCTTGGCCATGAATCCTGATCCCAGTGGCTGTGTTCAATATCATGACTTCTTGAGGGTTTTAAGACTTAAGGCTTGCCCGCAATCTGCAAAGaTATTTGCATTCATTGATGTGGAGAAGAGTGGGACAATTACATTCAGACAGTTCTTGTATGGATCTGTCCATGTCATGAAGCAACCAGGGTTCCATCAAGCCTGCGAAGAAGCCTTTGCTGGGAGTGGTGGTGCAGTAAAGGGCTATATTGTTGAACGAGAGTTACGAGATTTCATCCAACCTGCTATCCCCAGCTGGAATGAGGATGagATCCATaatctttttacattatttgatGACAATAATGATGGAAGAATTGACAAGGATGACTTTCTTTCATGCTTTAGAAGAAATCCTCTTCTAATAGCATTTTTTACACTCCAACCGCAGCAGAGGGAATTGGATGATAATGGATTGATGGAGATAGTTTGA 1578 0.4766 MADADLTSPLLSSDHIVVTVHSSAAAPASDGPFRFLGCDDELAVPPPPTVDPFRNGTAAVEGLYEWAKTAACLPVAVLRLALFGLCLVVGYVATRIALEGWKDKENPMPKWRCRFMWITRLCARCILFSFGYHWIKRKGRPAPREVAPIIVSNHVSYIEPIFYFYELFPTIVASESHDSIPFVGTIIRAMQVIYVNRFEPSSRKQAVREIKRRASCNKFPRVLLFPEGTTTNGRNLISFQLGAFIPGYPIQPLIVRYPHVHFDQSWGHVSLGKLMFRMFTQFHNFFEVEYLPVISPLDDKETAVHFRERTSRAMATTMNVVQTGHSYGDIMLHTKAQEAKQENPSSYMVEMAKVESLFHISSMEAVDFLDKFLAMNPDPSGCVQYHDFLRVLRLKACPQSAKIFAFIDVEKSGTITFRQFLYGSVHVMKQPGFHQACEEAFAGSGGAVKGYIVERELRDFIQPAIPSWNEDEIHNLFTLFDDNNDGRIDKDDFLSCFRRNPLLIAFFTLQPQQRELDDNGLMEIV 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2682 525 SMART efh_1 472 500 IPR002048 GO:0005509
Ssu4g2682 525 SMART efh_1 399 427 IPR002048 GO:0005509
Ssu4g2682 525 Pfam EF-hand domain pair 469 499 IPR002048 GO:0005509
Ssu4g2682 525 CDD LPLAT_LPCAT1-like 123 331 IPR045252 GO:0008374
Ssu4g2682 525 Pfam Acyltransferase 146 244 IPR002123 GO:0016746
Ssu4g2682 525 Gene3D - 349 503 - -
Ssu4g2682 525 ProSitePatterns EF-hand calcium-binding domain. 481 493 IPR018247 -
Ssu4g2682 525 PANTHER LYSOPHOSPHATIDYLCHOLINE ACYLTRANSFERASE 1-RELATED 18 513 - -
Ssu4g2682 525 SUPERFAMILY EF-hand 359 508 IPR011992 -
Ssu4g2682 525 SUPERFAMILY Glycerol-3-phosphate (1)-acyltransferase 113 328 - -
Ssu4g2682 525 ProSiteProfiles EF-hand calcium-binding domain profile. 468 503 IPR002048 GO:0005509
Ssu4g2682 525 SMART plsc_2 148 258 IPR002123 GO:0016746
Ssu4g2682 525 PANTHER PHOSPHOLIPID ACYLTRANSFERASE 18 513 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2682 Ssu-Chr4 68219257 68227571 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2682 98 329 Acyl Lipid Metabolism Gene Families AT1G80950 31.679 3.02e-32 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2682 K13510 - gmx:100818109 924.465