Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2677 ATGGGCTCAGAAGCAGAAGGCACGCAAATTGAGAATCCAACACACACACCCCAGCCCCATACCCAACATCAACATCATCGTAACATTGCTTCACCCGAAAACCAAACTACTTCCCACTACGGCGGTGACGACGCCGACGGCGACAGGCAGGTAACTCTAGTCCCGCCTCATTCCCTCCTCCCCATGCCCGTCCCGCCGCAGTTCTCCAACCAACACGACGCCGCTCCGGCGAGCTTCTCCGTCGGGAGCTTCCTCCGGCAGCGGAGCAGTGACCTCTCCGCCGCGATCATCAAGCGCGTCTCCTCTCTCCGCCAATCCATGgaagaaaacaacaacaacgacgacgacgacgacggcGATAATAACGAGAATCGCGACGTGACGGAGTTCAACCTCTCCGGCGTCAAGGTCGTGGTGACGCAGAGGCCGCCGGAGGAGGAACCGTCAATGAAAGGACGCGTCAGCTTCTTCTCGAGGTCCGACTGCAGAGACTGCACCGCGGTTAGAAAATTCTTCAGAGAGAGAGGGTTAAAATTCGTGGAGATAAACGTCGACGTTTTCGGCGAGAGAGAGAGGGAGCTGAGGGAGAGGGCGGGGAGCGGTTCGGTGCCGCAGATCTTCTTCAACGAGAAGCTGATCGGGGGGCTGGTGGCGCTGAACTCGCTGCGGAACGGCGGGGAGTTCGACCGGAGAGTGGCGGAGATGGTCGCGGAGACGGCGGCCGGCGACGACGCGCCGGCCCCCCCGGCGTACGGGTTCGATTGGCCGGAGGAGGAGCCCGCGGACGAGGCGGTTGCGGTGGTTAGGGTTCTGAGGCAGAGGTTGCCGATTCGGGAGCGGTGGAGGAGGATGAAGATGGTGAAGAACTGCTTCGAAGGGAACGAGTTGGTGGAGGCGCTCGTTCAGCACTTCCACTGCGCGCGTAACGAGGCTGTTGAAATCGGGAAACAATTATCCAGGAAGCACTTCATCCATCATGTTTTCGGGGAAAATGATTTTGAGGAGGGAAATCACTTATATCGTTTCCTTGAGCATGAACCCTTTATCCCCAGATGCTTTAATTTTCGTGGTGCCACAAATGATAGTGAACCAAAGACTGCAGCTGCAATATGCGCGAGGCTTACCAAGATTATGTCTGCCATTCTTGAGTCTTATGCTTCCGATGATAGGCAACATGTTGATTATGGGGCCATTAGCAAAAGCGAAGAATTTCGTAGGTATGTAAATATGACCCAGGATCTGCAGCGAGTGAATCTCTTGGAACTATCAGAAAACGAGAAGCTTGCCttcttcttaaatttatataatgctATGGTCATCCATGCTGTTATTAGCGTAGGATGTCCAGAAGGTGTAATTGATAGGAGATCCTTCTTCAGTGATTTCCAGTATTTGGTTGGAGGGCATCCTTAttctctaaatattattaaaaatggtatccTCAGATGCAACCGGAGGTCACCATATTCCTTAGTAAAGTCCTTTAGCACAGGAGACAAGCGGTTAGAGGTTGCTCTTGTCAAGTTGAATCCGTTATTTCATTTTGGACTTTGTAATGGTACAAAGTCCAGCCCTAAGGTTAGGTTCTTCGCACCACATAGAGTTGTAGACGAACTAAGAGGTGCTGCAAGGGAGTTCTTTGAGAACGACGGAATTGAAGTGGACCTGGAGAAGAGAACTGTTCATCTAACTCGGATTTTCAAGTGGTTTAGTGGGGATTTTGGACAAGAGAAAGACATATTGAAGTGGATAATTAATTACTTGGATCCAAATAAAGCCGGTCTTGTGACACATCTCTTGGGAGATAGTGGACCAGTTTATATCTCTTACCAGAATTTTGATTGGTCAATAAATTCTTGA 1860 0.4925 MGSEAEGTQIENPTHTPQPHTQHQHHRNIASPENQTTSHYGGDDADGDRQVTLVPPHSLLPMPVPPQFSNQHDAAPASFSVGSFLRQRSSDLSAAIIKRVSSLRQSMEENNNNDDDDDGDNNENRDVTEFNLSGVKVVVTQRPPEEEPSMKGRVSFFSRSDCRDCTAVRKFFRERGLKFVEINVDVFGERERELRERAGSGSVPQIFFNEKLIGGLVALNSLRNGGEFDRRVAEMVAETAAGDDAPAPPAYGFDWPEEEPADEAVAVVRVLRQRLPIRERWRRMKMVKNCFEGNELVEALVQHFHCARNEAVEIGKQLSRKHFIHHVFGENDFEEGNHLYRFLEHEPFIPRCFNFRGATNDSEPKTAAAICARLTKIMSAILESYASDDRQHVDYGAISKSEEFRRYVNMTQDLQRVNLLELSENEKLAFFLNLYNAMVIHAVISVGCPEGVIDRRSFFSDFQYLVGGHPYSLNIIKNGILRCNRRSPYSLVKSFSTGDKRLEVALVKLNPLFHFGLCNGTKSSPKVRFFAPHRVVDELRGAAREFFENDGIEVDLEKRTVHLTRIFKWFSGDFGQEKDILKWIINYLDPNKAGLVTHLLGDSGPVYISYQNFDWSINS 619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2677 619 PANTHER ELECTRON CARRIER/ PROTEIN DISULFIDE OXIDOREDUCTASE 18 619 - -
Ssu4g2677 619 Pfam Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP) 275 342 IPR000591 GO:0035556
Ssu4g2677 619 SMART DEP_3 271 344 IPR000591 GO:0035556
Ssu4g2677 619 MobiDBLite consensus disorder prediction 1 74 - -
Ssu4g2677 619 Pfam Glutaredoxin 155 213 IPR002109 -
Ssu4g2677 619 MobiDBLite consensus disorder prediction 105 127 - -
Ssu4g2677 619 Gene3D - 260 395 IPR036388 -
Ssu4g2677 619 PANTHER DISHEVELLED/EGL-10/LECKSTRIN DOMAIN PROTEIN 18 619 - -
Ssu4g2677 619 SUPERFAMILY "Winged helix" DNA-binding domain 263 360 IPR036390 -
Ssu4g2677 619 CDD DEP 263 341 - -
Ssu4g2677 619 ProSiteProfiles DEP domain profile. 271 344 IPR000591 GO:0035556
Ssu4g2677 619 MobiDBLite consensus disorder prediction 1 41 - -
Ssu4g2677 619 Pfam Protein of unknown function, DUF547 421 546 IPR006869 -
Ssu4g2677 619 SUPERFAMILY Thioredoxin-like 151 233 IPR036249 -
Ssu4g2677 619 Gene3D Glutaredoxin 148 235 - -
Ssu4g2677 619 ProSiteProfiles Glutaredoxin domain profile. 142 239 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2677 Ssu-Chr4 68060435 68065971 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2677 - - gmx:100813775 977.622