Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2674 ATGCTAGTCCCCCATCCATCAATGCTACTTGCACCTCAAAACACCATAGAAAATGAGATGGAAGGACAGAAACTAAGCTTTGATGGATCTTTCATGCCAAACCAATCCAACATACCCTCCCAGTTCATATGGCCTGATCATGAGAAACCATGCCTAACACCACCAGAACTCCAAATCCCACCCATTGACTTGAAGGGGTTTCTCTCAGGAGATCCACAAGCTGTGTCAACTGTTTGTGCACAAGTGAATGAGGCATGCAAGAAGCATGGCTTCTTTCTTGTTGTCAACCATGGGGTAGAGAGTAACCTCATAGCTCAAGCTCATAAGCTCATAGATGACTTCTTCTGCATGCAACTGTCAGAGAAGCAGAAGGCTCAGAGAAAGGTTGGAGAACATTGTGGCTATGCCAACAGCTTCATAGGAAGGTTCTCCTCCAAACTTCCTTGGAAGGAAACACTTTCTTTCCATTACTCTCCAGATAAATCCAGCAAAACTGTGGAGGACTATTTTGTAAATGTCATGGGGGAAGATTTCAGGCAATTTGGGAGTGTGTTCCAAGAATACTGTGAAGCCATGAGCAATCTCTCTCTTGGGATCATGGAGCTTCTGGGGATGAGCCTAGGAGTTGGCAGGGAATGTTTCAGAGATTTCTACGAAGGAAATGAGTCGGTTATGAGGTTGAATTACTACCCACCATGCCAAAAACCCGAGTTAGCTTTAGGAACTGGGCCTCATTGTGACCCTACATCCCTAACCATTCTCCACCAAGATCAAGTCGAGGGTCTCCAAGTCTTTGTTGATGGAAGATGGTACTCCGTTGCTCCAAAAGAAGATGCGTTCGTTGTCAACATTGGCGACACATTTATGGCTCTATCAAATGGGATTTTCAAGAGTTGCTTGCATAGAGCAGTTGTAAACAACAAAATTGTGAGAAAATCACTTGCTTTCTTCCTATGTCCAAATAGAGACAAAGTGGTTACCCCTCCAAAAGATCTAATTAGCATCAAGAATCCAAGAATGTATCCTGAATTCTCATGGCCAAGTCTTCTTGAATTTACACAGAAACATTACAGGGCTGACATGAAAACTCTTGATGCTTTCTCGAGGTGGCTACAAGAGAAAAACAACTAA 1131 0.4341 MLVPHPSMLLAPQNTIENEMEGQKLSFDGSFMPNQSNIPSQFIWPDHEKPCLTPPELQIPPIDLKGFLSGDPQAVSTVCAQVNEACKKHGFFLVVNHGVESNLIAQAHKLIDDFFCMQLSEKQKAQRKVGEHCGYANSFIGRFSSKLPWKETLSFHYSPDKSSKTVEDYFVNVMGEDFRQFGSVFQEYCEAMSNLSLGIMELLGMSLGVGRECFRDFYEGNESVMRLNYYPPCQKPELALGTGPHCDPTSLTILHQDQVEGLQVFVDGRWYSVAPKEDAFVVNIGDTFMALSNGIFKSCLHRAVVNNKIVRKSLAFFLCPNRDKVVTPPKDLISIKNPRMYPEFSWPSLLEFTQKHYRADMKTLDAFSRWLQEKNN 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2674 376 Pfam non-haem dioxygenase in morphine synthesis N-terminal 59 165 IPR026992 -
Ssu4g2674 376 Gene3D - 31 359 IPR027443 -
Ssu4g2674 376 Pfam 2OG-Fe(II) oxygenase superfamily 222 320 IPR044861 -
Ssu4g2674 376 PRINTS Isopenicillin N synthase signature 245 266 - -
Ssu4g2674 376 PRINTS Isopenicillin N synthase signature 82 99 - -
Ssu4g2674 376 PRINTS Isopenicillin N synthase signature 280 306 - -
Ssu4g2674 376 PANTHER GIBBERELLIN 20-OXIDASE 19 372 - -
Ssu4g2674 376 SUPERFAMILY Clavaminate synthase-like 28 360 - -
Ssu4g2674 376 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 220 320 IPR005123 -
Ssu4g2674 376 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 19 372 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2674 Ssu-Chr4 67955067 67957166 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2674 13 368 Glycosyltransferase AT5G59530 27.568 1.19e-34 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2674 K05282 - gmx:100775693 726.087