LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ssu4g2663	ATGAACGGCGGTGGAGGTGACTTGCCGCCGCCTCCGGCCAACGGCGGCGAGTTCCTCCTCTCTCTCATCCAGCGCCCCCATCCGCCGCAGCCCCACcagccgccgccgccgccgccgcaaTCTCCGGCGATAGACCCCGCCGTCGCCGCCATCGGCCCCACGATCCACGTCGCCGCTCCGCCGTATCAAATCGCCGGCGCCGATCACCCCCTCCACCCTCACTCTCACCCTCATCACCTTCCTCCGTGGTCCCACACTCTCCTTTCTTCTCCGAACCTTTACCCTCCAAACTTTTTCGGGTTGCCCCATAACCCGTTCCCCCCTCCTCGGACCCACTTCCCCGTCACCCCTAACTCCGTCACCAACGGCGTTAACCTCACCCACGATCTGCGAAAATTAGGGTTTCCGATTGAAGACGCCAACATCACCAACACCAACGCCAAcgccaacaacaataacaaaatcaatGCTTTAGTTCAGCAGCAGGAGCTGAAGCTTCAGTTCGGGTCTTTGCCCACCGTTGCCTATTCCGCCTCTGAGGTTTCCTCCAACGGGGAATCCTTGCTCAATTTGAAGTTCAGCAGAGGGTATAACGGGTTTGATAGGAACTTGCACGTGGACCCCAATTCGAAATCGAGTGGGAATATGGTTCTGCAGGGTAATCATGATGttttggagaaagaaaggagaggaCTTGGGGGTTATAGGGCTAGTGGGTTGTTGTCCCCTGAGACAAGTAGGGTTCCACCGGGGTTTGAGAACAAGAATAGGGGGAAGGGTTTGGAGGGTAGGAAGGATAGGAATGAGAATTTGTATGGTAAGAGGGAAGGTGTGAGAATGGTGTCTGGTGAAAGGAGCAATGTTAGAGGCAATGTGGGGCTTGTTGATCAGCTTGATCGCCCCAGGCCGCTTGCCGGGAGTAACCTCCATTCGGGCTTGGCGAATGAGACTGGCATTGGTGTAGTTGGTGTTAGGGATGGTAAGCATAAGGGAGGTGGTAGGTTAAGGGTGGAGGGTGTTGCTGACTCTGGTGGAAGTGGTGGTGATGTTTTTGTCCTTGGGGAGCGGTTGGCTGATTCCTTGTTGGTTGAGGATGAGTCTGATGACAGGGCTAACTCAAGGCAACGCCGTGGCGCTCGAGAGAAGGACCGTTTGTTCAAAAACCTGGATAGGTTATTGAGTTTTACAGTTATCTACCAGTCATTAAATGATGAGGATGCTAGATCATCGGATTCAAGAGGACAGCATCTCCTGAGCCAGCGGGCAAGAATGTATAAAAGACAGATGATGTGTCGCAGGGACATAGATGTTCTTAATGTTCCTTTCCTTGCAATATATGAGTCTCTAATACCTCCTGAAGAAGAAAAGCAGAAGCAAAAGCAATTAGTAGCATTGTTGGAGAAATTAGTTAACAAGGAATGGCCAACAGCTAAGCTTTATCTCTATGGATCATGTGCTAATTCATTTGATGTTTCTAAAAGTGACATTGATGTGTGCCTTGCTATTGAGGAAGCAGACATGGACAAATCTAAGATTATAATGAAATTGGCGGATATTTTGCAATCAGATAATCTGCAGAATGTGCAGGCATTGACACGAGCACGGGTTCCCATAGTAAAGCTCATGGATCCAGTGACAGGAATTTCTTGTGACATATGCATTAACAATGTCCTAGCTGTTGTGAATACAAAGCTTCTTAGGGATTATGCACACATAGATGCAAGGTTACGGCAGCTggcttttattataaaacattggGCAAAGTCAAGAGGAGTCAATGAAACTTACCACGGGACCTTATCTAGCTATGCgtATGTTTTAATGTGCATTCATTTCTTACAAATGCGAAGACCTGCTATCCTTCCATGCTTACAGGAAATGGAGACAACATATTCTGTAACTGTGGACGATATAGATTGTGCTTACTTTGATCAAGTTGAAAAACTTTGTGATTTTGGTCACCGTAACAAGGAAACGATTGCTCAGCTTGTGTGGGGATTTTTCTACTATTGGGCATATTGTCATGATTATGCAAGTGCTGTTATATCTGTACGCACGGGAAGCATAATCAGCAAGCGAGAGAAGGACTGGACGAGAAGGATCGGTAATGATCGCCATTTGATATGTATAGAGGATCCTTTTGAAATCTCTCATGATCTAGGTCGAGTGGTAGATAAACACAGCATCAAAGTCCTTAGGGAAGAGTTTGAACGTGCTGCTGACATCATGCAGTATGATCCAAATCCATGTATTAAACTTTTTGAGCCTTATGTTCCCGGTTGA	2283	0.459	MNGGGGDLPPPPANGGEFLLSLIQRPHPPQPHQPPPPPPQSPAIDPAVAAIGPTIHVAAPPYQIAGADHPLHPHSHPHHLPPWSHTLLSSPNLYPPNFFGLPHNPFPPPRTHFPVTPNSVTNGVNLTHDLRKLGFPIEDANITNTNANANNNNKINALVQQQELKLQFGSLPTVAYSASEVSSNGESLLNLKFSRGYNGFDRNLHVDPNSKSSGNMVLQGNHDVLEKERRGLGGYRASGLLSPETSRVPPGFENKNRGKGLEGRKDRNENLYGKREGVRMVSGERSNVRGNVGLVDQLDRPRPLAGSNLHSGLANETGIGVVGVRDGKHKGGGRLRVEGVADSGGSGGDVFVLGERLADSLLVEDESDDRANSRQRRGAREKDRLFKNLDRLLSFTVIYQSLNDEDARSSDSRGQHLLSQRARMYKRQMMCRRDIDVLNVPFLAIYESLIPPEEEKQKQKQLVALLEKLVNKEWPTAKLYLYGSCANSFDVSKSDIDVCLAIEEADMDKSKIIMKLADILQSDNLQNVQALTRARVPIVKLMDPVTGISCDICINNVLAVVNTKLLRDYAHIDARLRQLAFIIKHWAKSRGVNETYHGTLSSYAYVLMCIHFLQMRRPAILPCLQEMETTYSVTVDDIDCAYFDQVEKLCDFGHRNKETIAQLVWGFFYYWAYCHDYASAVISVRTGSIISKREKDWTRRIGNDRHLICIEDPFEISHDLGRVVDKHSIKVLREEFERAADIMQYDPNPCIKLFEPYVPG	760

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ssu4g2663	760	PANTHER	UTP:RNA URIDYLYLTRANSFERASE 1	66	759	-	-
	Ssu4g2663	760	Gene3D	-	573	741	-	-
	Ssu4g2663	760	Pfam	TUTase nucleotidyltransferase domain	453	552	IPR045100	GO:0016779
	Ssu4g2663	760	Pfam	Cid1 family poly A polymerase	660	718	IPR002058	-
	Ssu4g2663	760	SUPERFAMILY	Nucleotidyltransferase	436	571	IPR043519	-
	Ssu4g2663	760	SUPERFAMILY	PAP/OAS1 substrate-binding domain	575	744	-	-
	Ssu4g2663	760	Gene3D	Beta Polymerase, domain 2	459	572	IPR043519	-
	Ssu4g2663	760	MobiDBLite	consensus disorder prediction	1	46	-	-
	Ssu4g2663	760	MobiDBLite	consensus disorder prediction	235	268	-	-
	Ssu4g2663	760	CDD	NT_PAP_TUTase	460	570	-	-
	Ssu4g2663	760	PANTHER	POLY A POLYMERASE CID PAP -RELATED	66	759	-	-
	Ssu4g2663	760	MobiDBLite	consensus disorder prediction	27	44	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ssu4g2663	Ssu-Chr4	67822620	67828162	Dispersed/Proximal

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ssu4g2663	-		-	gmx:100812787	1095.49