Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2634 ATGCTATACTCTCAAATAGCTTTCAAAACCCTCCATAACGTACCGTTACAGCTATCATTCAAACTTGGCTCAAAACTCTTGCACGCGCTCAAACATGAACACCACCTATTCGACCTTATTCCCCACCCAAACGTTGCCTCAGTTAACCGTTCCATGCTCAACCGTTTGCACAACCACCTTCCCTTTCAAGCTCTTGCTGCATTCAAGAAGCATTTCCAGTTGCATTCTCATGAGAATGTTGACGAAGTTACCATTGCCTTGTCCCTCAAGGCTTGTCAAGGAGAGTTAAAACTCGGGTGTCAAATCCATGGATTCGCGGTGTCCAGTGGGTTTGTTTCGTTTGTCACGGTGTCGAATTCGCTCATGAAAATGTACTGCAAATCTGGGAATTTTGGGAAGGCTTTGCTTGTGTTTGAGAATTTGAGTCATCCTGACATAGTGTCTTGGAATACCATGCTTTCAGGGTTTGAGGAGAGTGTGGATGCTTTGAATTTTGCACGTTCTATGCATTTTCATGGGATTGTTTTTGATCCGGTGACATACACTACTGCTCTTGCGTTTTGTTGGGGTGATCATGGGTTTTTATTTGGGTGGCAATTGCATTCTCTTGTGGTTAAATGtggatttggttgtgaagtTTTTGTTGGGAATGCGTTTGTGACCATGTATTCGAGGTGGGGGGTGTTAGATGAGGCTAGGGGAGTGTTTGATGAAATGCCAATAAGAGATTTGGTTTCGTGGAATGCGATGATTTCAGGGTATGCTCAAGAGGGGGAATGTTATGGGTTGGAAGCAGTTTTATTGTTTGTCAACATGGTAAGACAAGGTATGTTAATTGACCATGTTTCACTTACAGGTGCAGTTTCAGCTTGTGGTTATATGAGAAACTTAGAGCTGGGGAGGCAGATACATGGTTTGGCCCAAAAAGTGGGATGTGGAACACATGTTTCAGTTTGCAATGTTTTGATGTCAACTTATTCAAAATGTGAGGTCCCTAAAGATGCAAAAGCTGTTTTTCAGCTCATTAGTAGTCGGAATGTAGTCTCATGGACGACAATGATTTCTATTGAGGAAGAAGATGCAGTGTCTATCTTTAATGCAATGAGAAATGATGACGTGTATCCAAATGATGTTACGTTTATAGGATTAATACATGCTATAACAATCAGGAATTTAGTGACAGAAGGTCTAATGATGCATGGGTTATGCATAAAAAGCTGCCTTTTGTCAGAACAAACTGTCTCCAATAGCCTTATTACCATGTATGCCAAGTTTGAGTCCATTCAAGAATCAAAGAAGATTTTTGAGGAGCTTAACTGTCGAGAGACAATATCATGGAATGCATTAATTTCAGGGTATGCTCAAAATGGCTTGTATAAAGAAGCTTTCCTTACATTTTTGTCTGCAGTAAAGGAGATAAAGCCTAACCAATACACATTTGGTAGTGTCTTAAATGCTATTGCTGCTGCTGAAGATATATCATTGAAACATGGGCAATGTTGCCATTCTCATTTGCTCAAACTTGGTTTAAGCACCGACCCAGTTGTTTCAGGGGCTCTGCTTGACATGTATGGCAAGCGTGGAAACATAATGGAGTCTCAAAGAGTATTCAATGAGACACTTGAAAGAACCCAGTTTGCTTGGACAGCAATAATATCTGCCTATTCTCGCCATGGAGACTTTGAGTCAGTGATGAGTTTGTATACAGAAATGGAGAGGGAAGGAAGCAGTCCTGACTCTATCacttttctttctgttttggCTGCATGTTGTAGAAAGGGCATGGTTGATATAGGCTACAGAGTCTTTGACTCTATGGTTAAAAAACATTCAATTGAGCCAACCTCTGAGCATTACTCTATTATGGTGGACATGTTGGGCCGTGCTGGACGACTAGATGAGGCAGAAGAGTTGATGCACCAGATTCCACGTGGACCTGGATTGTCAGTGTTGCAAAGTTTGCTTGGGTCTTGTAGATTACATGGGAATATGGAGATGGCTGAGAAGGTTGTTGGTAGATTGATAGAAATGGATCCTGCAAGTTCAGGTCCATATGTGTTGATGGCAAACTTATATGCTGAGAAAGGGAAATGGGAGAAAGTTGCTGAAGTGCGAAAAGGGATGAGAGGGAGAGGAGTAAAGAAAGAAGTGGGATTTAGTTGGGTGGATGTTGCTAATGTTGATTCCTTGTATTTGCATAGCTTCTCCTCTGGGGATAAGTCACACCCGGAGTCTGAGAATATTTGTAGAATGGCAGAGTTTCTAGGATTGCAAATGAGATTTTTGAAAGAGAGCAGAGGGAGGGAAGGAGAGTGGTATCATGAGTaa 2328 0.4107 MLYSQIAFKTLHNVPLQLSFKLGSKLLHALKHEHHLFDLIPHPNVASVNRSMLNRLHNHLPFQALAAFKKHFQLHSHENVDEVTIALSLKACQGELKLGCQIHGFAVSSGFVSFVTVSNSLMKMYCKSGNFGKALLVFENLSHPDIVSWNTMLSGFEESVDALNFARSMHFHGIVFDPVTYTTALAFCWGDHGFLFGWQLHSLVVKCGFGCEVFVGNAFVTMYSRWGVLDEARGVFDEMPIRDLVSWNAMISGYAQEGECYGLEAVLLFVNMVRQGMLIDHVSLTGAVSACGYMRNLELGRQIHGLAQKVGCGTHVSVCNVLMSTYSKCEVPKDAKAVFQLISSRNVVSWTTMISIEEEDAVSIFNAMRNDDVYPNDVTFIGLIHAITIRNLVTEGLMMHGLCIKSCLLSEQTVSNSLITMYAKFESIQESKKIFEELNCRETISWNALISGYAQNGLYKEAFLTFLSAVKEIKPNQYTFGSVLNAIAAAEDISLKHGQCCHSHLLKLGLSTDPVVSGALLDMYGKRGNIMESQRVFNETLERTQFAWTAIISAYSRHGDFESVMSLYTEMEREGSSPDSITFLSVLAACCRKGMVDIGYRVFDSMVKKHSIEPTSEHYSIMVDMLGRAGRLDEAEELMHQIPRGPGLSVLQSLLGSCRLHGNMEMAEKVVGRLIEMDPASSGPYVLMANLYAEKGKWEKVAEVRKGMRGRGVKKEVGFSWVDVANVDSLYLHSFSSGDKSHPESENICRMAEFLGLQMRFLKESRGREGEWYHE 775
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2634 775 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 615 645 IPR002885 -
Ssu4g2634 775 PANTHER OS07G0578800 PROTEIN-RELATED 27 470 IPR045215 GO:0003723|GO:0009451
Ssu4g2634 775 PANTHER OS07G0578800 PROTEIN-RELATED 557 768 IPR045215 GO:0003723|GO:0009451
Ssu4g2634 775 Pfam E motif 661 723 IPR046848 -
Ssu4g2634 775 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 243 279 IPR002885 -
Ssu4g2634 775 PANTHER OS07G0670000 PROTEIN 472 567 - -
Ssu4g2634 775 Pfam PPR repeat family 545 592 IPR002885 -
Ssu4g2634 775 TIGRFAM PPR: pentatricopeptide repeat domain 581 615 IPR002885 -
Ssu4g2634 775 TIGRFAM PPR: pentatricopeptide repeat domain 619 642 IPR002885 -
Ssu4g2634 775 TIGRFAM PPR: pentatricopeptide repeat domain 444 466 IPR002885 -
Ssu4g2634 775 TIGRFAM PPR: pentatricopeptide repeat domain 119 140 IPR002885 -
Ssu4g2634 775 TIGRFAM PPR: pentatricopeptide repeat domain 547 580 IPR002885 -
Ssu4g2634 775 Pfam PPR repeat 217 240 IPR002885 -
Ssu4g2634 775 Pfam PPR repeat 245 260 IPR002885 -
Ssu4g2634 775 Pfam PPR repeat 444 466 IPR002885 -
Ssu4g2634 775 Pfam PPR repeat 119 139 IPR002885 -
Ssu4g2634 775 Pfam PPR repeat 416 438 IPR002885 -
Ssu4g2634 775 Pfam PPR repeat 612 641 IPR002885 -
Ssu4g2634 775 SUPERFAMILY TPR-like 443 701 IPR011990 GO:0005515
Ssu4g2634 775 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 579 614 IPR002885 -
Ssu4g2634 775 Gene3D Tetratricopeptide repeat domain 191 309 IPR011990 GO:0005515
Ssu4g2634 775 PANTHER OS07G0578800 PROTEIN-RELATED 472 567 IPR045215 GO:0003723|GO:0009451
Ssu4g2634 775 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 544 578 IPR002885 -
Ssu4g2634 775 Gene3D Tetratricopeptide repeat domain 357 505 IPR011990 GO:0005515
Ssu4g2634 775 Gene3D Tetratricopeptide repeat domain 517 729 IPR011990 GO:0005515
Ssu4g2634 775 Gene3D Tetratricopeptide repeat domain 57 189 IPR011990 GO:0005515
Ssu4g2634 775 PANTHER OS07G0670000 PROTEIN 27 470 - -
Ssu4g2634 775 PANTHER OS07G0670000 PROTEIN 557 768 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2634 Ssu-Chr4 66957471 66959798 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2634 80 748 Glycoside Hydrolase AT3G49170 31.548 6.23e-108 347
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2634 - - cam:101513383 1251.5