Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2627 ATGGAGCTGTCCACTCAGTTTCATCAAGTTTTCAAGCTTATTGACACTAATGGGGATGGGAAGATATCAACCACTGAGCTCAGTGAAGTGCTTTCATGCCTTGGATACAACAAGTGCACGGCTGCTAAGGAAGCTGAAGGCATGGTAAGAGTGTTGGACTTCAATGGAGATGGGTTTGTGGACTTGGATGAGTTCATGGTTGTCATGAATGGCATGGAAGAAGAGGACAAGACTGGAAGTGGCATGGAGCATGATGATGGTTACCTCATGGATGCTTTTCTTGTCTTTGACACTGACAGGAATGGCCTAATTTCATCCAAGGAACTGCAGAGAGTTCTGATGAATCTAGGGTGTGATAATTGTAGTCTCAGAGAGTGCAATCGTATGATCAAAGGGGTTGATAAGAATGGAGATGGGTTTGTGGATTTTGAAGAATTTAGATCCATGATGCAAAATGGACTTGCCAATTAG 471 0.4331 MELSTQFHQVFKLIDTNGDGKISTTELSEVLSCLGYNKCTAAKEAEGMVRVLDFNGDGFVDLDEFMVVMNGMEEEDKTGSGMEHDDGYLMDAFLVFDTDRNGLISSKELQRVLMNLGCDNCSLRECNRMIKGVDKNGDGFVDFEEFRSMMQNGLAN 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2627 156 Gene3D - 2 84 - -
Ssu4g2627 156 Pfam EF-hand domain pair 6 69 IPR002048 GO:0005509
Ssu4g2627 156 Pfam EF-hand domain pair 89 151 IPR002048 GO:0005509
Ssu4g2627 156 PANTHER CALCIUM BINDING PROTEIN 6 153 - -
Ssu4g2627 156 SUPERFAMILY EF-hand 5 152 IPR011992 -
Ssu4g2627 156 ProSitePatterns EF-hand calcium-binding domain. 97 109 IPR018247 -
Ssu4g2627 156 CDD EFh 88 151 IPR002048 GO:0005509
Ssu4g2627 156 PANTHER CALCIUM-BINDING PROTEIN CML25-RELATED 6 153 - -
Ssu4g2627 156 ProSiteProfiles EF-hand calcium-binding domain profile. 121 156 IPR002048 GO:0005509
Ssu4g2627 156 SMART efh_1 88 116 IPR002048 GO:0005509
Ssu4g2627 156 SMART efh_1 44 72 IPR002048 GO:0005509
Ssu4g2627 156 SMART efh_1 125 153 IPR002048 GO:0005509
Ssu4g2627 156 SMART efh_1 6 34 IPR002048 GO:0005509
Ssu4g2627 156 ProSitePatterns EF-hand calcium-binding domain. 53 65 IPR018247 -
Ssu4g2627 156 ProSitePatterns EF-hand calcium-binding domain. 15 27 IPR018247 -
Ssu4g2627 156 ProSiteProfiles EF-hand calcium-binding domain profile. 40 75 IPR002048 GO:0005509
Ssu4g2627 156 ProSiteProfiles EF-hand calcium-binding domain profile. 84 119 IPR002048 GO:0005509
Ssu4g2627 156 ProSiteProfiles EF-hand calcium-binding domain profile. 2 37 IPR002048 GO:0005509
Ssu4g2627 156 ProSitePatterns EF-hand calcium-binding domain. 134 146 IPR018247 -
Ssu4g2627 156 CDD EFh 6 69 IPR002048 GO:0005509
Ssu4g2627 156 Gene3D - 85 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2627 Ssu-Chr4 66783057 66783527 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2627 89 154 EF-hand Containing Proteins AT1G24620 36.364 7.87e-07 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2627 - - gmx:100799475 289.656