Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2614 ATGTGCTTGTGTTGTTTAATTGAATACCTGGTGCAGCACGATATTTTGTTGAGGCGCTATTCTGTCATAATTCTTGATGAGGCTCATGAGAGGAGCTTGAACACAGACATTCTGATCGGGATGCTCTCACGTGTAATTAAAACTCGCAAAATGATTTATAATGAACAGCAAAAGGTGATACTTTCAGGGGAAAGTATAAGTCctgaaaaaatgatttttccaTTAAAACTTGTGCTTATGAGTGCCACCTTGCGAGTAGAAGACTTCACTTCTGGGAAGTTGTTCCATACTCCTCCACCTGTGATAGAAGTCCCTACAAGGCAATTTCCAGTAACAGCATACTTCTCAAAGAAAACGGAGAAAACAGATTACATTGGGGAAGCATATAAGAAGGTCTTGGCAATTCACAAGAGGTTGCCACCTGGGGGCATACTTGTCTTTGTTACCGGGCAAAGGGAAGTAGAGGATTTGTGCAGGAAGTTACGCAAAGCATCAAGGGAGTTTATCaagaaaaaagttgaaggaTCTGTGGAAAGTGATAGCACTGTGGTCCATGAAACAAATTCTGTTGAGGGAGTAAATATTAATGAGATCAGTGAAGCATTTGAGGTTCATGGAAATTCGTCCATCCAGCAAACCGATAGATTTAGTGGTTGTGATGAAGATGAGTATAACGTAAATGGGAATGAATCTGATTTTTCTTATGATTCAGAAACAGAGAGTGAACTGGAATTTGATGATGATGACAATCTTGAGCTTTCAGAGAACAAAAGTAATATTGTGGATGTCTTAGGGCAAGCAGGAAGTCTTGCTTCACTGAAGGCTGCTTTTGAAAAATTGTCTGGGCAAGCCACATTAAGCTCCTCAAATGGAGAGCAGACATCTTCTGTGAATATAGAAGGTAATTTAGACCAATCAAAAGTTTTCAGGGAGAAAAGAGCTAGAGAAAATTGCAGTCCTTCTCCAGGTGCACTCTTTGTTCTACCTCTGTATGCCATGCTTCCTGCAGCAGCTCAACTTCGTGTATTTGAAGAAGTCAGGGAGGGAGAGCGGCTTGTTGTTGTTGCCACAAATGTTGCCGAAACATCTCTAACAATTCCAGGGATAAAGTATGTGGTTGATACTGGAAGAGAAAAGGTGAAGAATTATGACCCCTCTAATGGCATGGAGACATATGAAGTACAATGGATAAGTAAGGCATCTGCTGCACAGCGTGCAGGCAGATCTGGGAGAACTGGACCTGGACACTGTTACCGTCTCTATTCTTCTGCAGCCTTTAATAATGAATTTCCTGAGTACTCTCCTGCCGAAGTTGAGAAGGTACCTGTTCATGGTGTCGTCCTTCTCTTGAAGTCCATGCATATTAAAAAGGTTGCAAACTTCCCATTTCCTACTTCTCTCAAAGCTGCTTCTCTGCTTGAGGCTGAGAATTGCTTGAAAGCTCTTGAAGCACTTGATAGCAAGGATGAACTTACACTTTTGGGAAAAGCCATGGCACATTATCCCTTGAGTCCTCGTCATTCTAGAATGCTACTCACTGTTATTAAAAATGCAAGACATGAGCATAAATGCAATCCAAATATGCTTTTGGCATATGCTGTTGCAGCTGGTGCTGCTCTGAGCTTGTCAAATCCTTTTGTAATGCAATATGAAGATGATAGCAGCAGAGATTCAGAGATGTCTGAGAAATCTAGTGTGGGAGACAGTGAGAAAGacatcaataaaaaagaaaagtcaagGAGAAAGAAACTAAGAGAAACAGCTAAAGTTGCACGTGAAAAATTTCGAGTTGTCACTAGTGATGCCCTAACCATAGCTTATGCTTTGCAGTGTTTTGAACATTCACAGAAATCAGTAGAATTCTGTGATGACAATGCATTGCATTTCAAAACCATGGATGAAATGTCCAAACTTCGACAGCAGCTACTTAAACTGGTCTTTTACCAGAGTGATAAAGGTGGTTTTGAAGAAGAGTACTCATGGACTCATGGAACTTTAGAGGATGTAGAACGTGCTTGGCAGGTTTCTTCTGAAAAATATCCTCTTTCTCTGATTGAGGAAAGGCTCATCTGTCAAGCAATATGTGCTGGCTGGGCAGATAGGGTTGCTAAGCGTATTACGGCTTCTTCTAGGGCATCTGATGGAGAGAAAACTTCTCGCACTTTAAGGTACCAATCATGCATGGTTGATGAAAGTGTTTTCCTTCATCGTTGGTCATCAGTTTCCATTGTAGGCCCTGAGTTTCTGGTTTACAATGAACTATTAGAGACCAAAAGACCAAACAAAGAAGGGATAACAAGTGCCAAGAGAGCATATATGCATGGAGTAACAAGTGTAGTGCCAGCTTGGCTTGTTGAGCATGCAAAGTCTTCATGTGTCTTCTCCGCTCCCCTGATGGACCCTAGACCTTATTATGATGCCCAGACTGACCAAGTAAAATGTTGGGTTATCCCAACCTTTGGGCGTTTCTGTTGGGAGCTTCCAAAGCATTCATTGCCCATTAGCAATGTTGAACATCGGGTGCAAGTGTTTGCCTATGCTTTGCTTGAAGGCCAGGTGTGTCCCTGTTTAAAATCTGTTCGAAAATACATGTCAGCCCCCCCTGAAAGTATTATGAAGAGAGAAGCATTTGGTCAAAAAAGGGTGGGAAATCTTTTAAGCAAGTTAAAGCGCAGGCTGATTGATAGCTCTGCTATGTTAAGAATGGTGTGGAAGGAGAATCCAAGGgaattattttcagaaattttgGATTGGTTTCAGCAGAGTTTTCACAAGCACTTCGAAGAGTTATGGTTACAAATGCTTAATGAACTGCTTATGGAGACACAAGAACGCCCTTGgcataaaagttttaaaaaaaagaaaggaaaatcaaaatcattacgATAA 2889 0.4001 MCLCCLIEYLVQHDILLRRYSVIILDEAHERSLNTDILIGMLSRVIKTRKMIYNEQQKVILSGESISPEKMIFPLKLVLMSATLRVEDFTSGKLFHTPPPVIEVPTRQFPVTAYFSKKTEKTDYIGEAYKKVLAIHKRLPPGGILVFVTGQREVEDLCRKLRKASREFIKKKVEGSVESDSTVVHETNSVEGVNINEISEAFEVHGNSSIQQTDRFSGCDEDEYNVNGNESDFSYDSETESELEFDDDDNLELSENKSNIVDVLGQAGSLASLKAAFEKLSGQATLSSSNGEQTSSVNIEGNLDQSKVFREKRARENCSPSPGALFVLPLYAMLPAAAQLRVFEEVREGERLVVVATNVAETSLTIPGIKYVVDTGREKVKNYDPSNGMETYEVQWISKASAAQRAGRSGRTGPGHCYRLYSSAAFNNEFPEYSPAEVEKVPVHGVVLLLKSMHIKKVANFPFPTSLKAASLLEAENCLKALEALDSKDELTLLGKAMAHYPLSPRHSRMLLTVIKNARHEHKCNPNMLLAYAVAAGAALSLSNPFVMQYEDDSSRDSEMSEKSSVGDSEKDINKKEKSRRKKLRETAKVAREKFRVVTSDALTIAYALQCFEHSQKSVEFCDDNALHFKTMDEMSKLRQQLLKLVFYQSDKGGFEEEYSWTHGTLEDVERAWQVSSEKYPLSLIEERLICQAICAGWADRVAKRITASSRASDGEKTSRTLRYQSCMVDESVFLHRWSSVSIVGPEFLVYNELLETKRPNKEGITSAKRAYMHGVTSVVPAWLVEHAKSSCVFSAPLMDPRPYYDAQTDQVKCWVIPTFGRFCWELPKHSLPISNVEHRVQVFAYALLEGQVCPCLKSVRKYMSAPPESIMKREAFGQKRVGNLLSKLKRRLIDSSAMLRMVWKENPRELFSEILDWFQQSFHKHFEELWLQMLNELLMETQERPWHKSFKKKKGKSKSLR 962
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2614 962 PANTHER - 11 956 - -
Ssu4g2614 962 Gene3D - 108 215 IPR027417 -
Ssu4g2614 962 Gene3D - 290 433 IPR027417 -
Ssu4g2614 962 SMART helicmild6 303 413 IPR001650 -
Ssu4g2614 962 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 690 789 IPR011709 -
Ssu4g2614 962 MobiDBLite consensus disorder prediction 553 585 - -
Ssu4g2614 962 Pfam Helicase associated domain (HA2) 475 604 IPR007502 GO:0004386
Ssu4g2614 962 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 11 517 IPR027417 -
Ssu4g2614 962 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 21 30 IPR002464 -
Ssu4g2614 962 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 272 454 IPR001650 -
Ssu4g2614 962 Gene3D - 5 107 IPR027417 -
Ssu4g2614 962 PANTHER ATP-DEPENDENT RNA HELICASE 11 956 - -
Ssu4g2614 962 CDD SF2_C_RHA 314 421 - -
Ssu4g2614 962 Coils Coil 574 594 - -
Ssu4g2614 962 Gene3D - 464 600 - -
Ssu4g2614 962 SMART ha2_5 474 606 IPR007502 GO:0004386
Ssu4g2614 962 Pfam Helicase conserved C-terminal domain 306 413 IPR001650 -
Ssu4g2614 962 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 102 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2614 Ssu-Chr4 66483084 66486460 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2614 K14780 - gmx:100788201 1674.83