Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2567 ATGGGTTTAGTGGTAAAACTGAACAAGCCAGACCCAAATTCAAAGGCACACAGACATTTCCTTGACCAACACGAAGTTATAAAATGTCTCCTTTCTCTTCCGCAGGATGCTTCAAGTTCTATTGCTTTGTCTGCAACTTCGGCTGCAACCCTAGCTTTCAGTTGTTTGCAATCAATGGCTGGTGAATCTGATGTACCCAAAAACACACTCTCTTGTGCTAACTGTGGCAAACCTGCAAATCTTCAaTGTCCAAAATGCATAGAATTGAAGCTCCCTCGCGAAGGTTCTGCCTTCTGCACTCAGGAATGTTTCAAGTTTTCATGGAGCTCGCACAAATCTGTGCATCTGAAGGCAAAACAATCCTCACCTGGCACACAAAATTCAGACTCACTTGGTGAAGGTTGGTTATATTGTATGAGGAAAGGGCAGGGTCGAACTCCAAAGATTCCTCATTTTGATTGGACTGGACCACTGCGGCCATATCCCATTTCTGGTAAACGGATTGTCCCAGATCATATTGATAAACCTGATTGGGCTGATGATGGAATTCCCAAAATTGAGCCCAATAGTGCTCTGCAGCATACTGTTGAGGTCAAAACTCCAGAtcaaattgagagaatgagggaaacTTGTCGGATTGCAAGGGAGGTGTTGGATGCAGCTGCTCGGATTATTCAGCCTGGTGTGACTACTGATGAGATTGACAGAGTTGTTCATGAGGCAACTATTGCTGCAGGAGGATACCCATCGCCTCTCAATTACCATTTCTTCCCTAAATCTTGCTGCACGTCAGTTAATGAAGTAATCTGCCATGGAATTCCTGATGCAAGGAAGCTTGAGGATGGTGACATTGTAAATATTGATGTCACTGTGTACTATAAAGGTGTTCATGGTGATCTCAATGAAACATACTTTGTGGGAAATGTTGATGAAGAGTCTCGCCAACTAGTAAAATGCACATATGAGTGCCTGGAGAAGGCAATATCCATTGTTAAACCTGGGGTACGATTCCGTGAAATTGGTGAAGTTATTAATCGTCATGCTTCAATGTCTGGCTTCTCTGTGGTAAAATCATATTGTGGTCATGGAATTGGAGAGCTCTTCCATTGTGCACCAAACATTCCTCATTATGCAAGAAATAAAGCAGTTGGTGTGATGAAGGCTGGGCAGACCTTTACAATTGAACCAATGATCAATGCAGgtGTCTGGCGTGATCGAATGTGGCCTGATGGATGGACTGCTGTTACAGCAGATGGTAAGCGAAGTGCTCAATTTGAGCACACTCTTTTGGTGACAGAGACTGGTGTTGAGGTTCTAACAGGGAGGTTGCAGACATCACCCAATGTTTTTCCTTGGCTAAATTCGTAA 1368 0.4284 MGLVVKLNKPDPNSKAHRHFLDQHEVIKCLLSLPQDASSSIALSATSAATLAFSCLQSMAGESDVPKNTLSCANCGKPANLQCPKCIELKLPREGSAFCTQECFKFSWSSHKSVHLKAKQSSPGTQNSDSLGEGWLYCMRKGQGRTPKIPHFDWTGPLRPYPISGKRIVPDHIDKPDWADDGIPKIEPNSALQHTVEVKTPDQIERMRETCRIAREVLDAAARIIQPGVTTDEIDRVVHEATIAAGGYPSPLNYHFFPKSCCTSVNEVICHGIPDARKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNVDEESRQLVKCTYECLEKAISIVKPGVRFREIGEVINRHASMSGFSVVKSYCGHGIGELFHCAPNIPHYARNKAVGVMKAGQTFTIEPMINAGVWRDRMWPDGWTAVTADGKRSAQFEHTLLVTETGVEVLTGRLQTSPNVFPWLNS 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2567 455 CDD MetAP1 204 440 IPR002467 GO:0006508|GO:0070006
Ssu4g2567 455 ProSitePatterns Methionine aminopeptidase subfamily 1 signature. 359 377 IPR002467 GO:0006508|GO:0070006
Ssu4g2567 455 SUPERFAMILY Creatinase/aminopeptidase 151 441 IPR036005 -
Ssu4g2567 455 Pfam zf-MYND-like zinc finger, mRNA-binding 73 116 IPR031615 -
Ssu4g2567 455 Gene3D - 58 120 - -
Ssu4g2567 455 Pfam Metallopeptidase family M24 205 433 IPR000994 -
Ssu4g2567 455 Hamap Methionine aminopeptidase [map]. 196 442 IPR002467 GO:0006508|GO:0070006
Ssu4g2567 455 PANTHER METHIONINE AMINOPEPTIDASE 1 70 448 - -
Ssu4g2567 455 SUPERFAMILY HIT/MYND zinc finger-like 69 113 - -
Ssu4g2567 455 PANTHER METHIONINE AMINOPEPTIDASE 70 448 - -
Ssu4g2567 455 Gene3D Creatinase/methionine aminopeptidase superfamily 152 451 IPR036005 -
Ssu4g2567 455 TIGRFAM met_pdase_I: methionine aminopeptidase, type I 197 441 IPR002467 GO:0006508|GO:0070006
Ssu4g2567 455 PRINTS Methionine aminopeptidase-1 signature 283 299 IPR001714 -
Ssu4g2567 455 PRINTS Methionine aminopeptidase-1 signature 261 274 IPR001714 -
Ssu4g2567 455 PRINTS Methionine aminopeptidase-1 signature 384 396 IPR001714 -
Ssu4g2567 455 PRINTS Methionine aminopeptidase-1 signature 353 365 IPR001714 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2567 Ssu-Chr4 65182949 65216214 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2567 K01265 - gmx:100813779 795.808