Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2561 atgtcgATAACCCTTCAATTGGACTCCACTCATACAATCGCTTTAGCTTTGAAACTCTCTTATAtgctatttctcttttcttcaattCCTAGTGCCCAAGGCTACACTGCTAGAGCTCATATCTTCATTTATGCTGCCTGCTCTCAAGAAAAATACCAACCTAACACACCCTTTGAAGCCAACCTTAATTCCTTTCTGTCTTCAGTTGCTGGCTCACCTTCAGACATTTCTTACAACAGCTTTGCTATTGGAAATGGAAGCTCATCACCACCAGAGGGATCCATATATGGCTTATACCAATGCAGGGTTGATTTGAGGCCCATTGAATGCTCAAAATGTGTGAAAAGTTGTGTTAACCAAATAGGCTTGGTTTGTCCCTTGGCACTTGGGGCATCTTTGCAACTTGAAGGCTGTTATCTAAGATATGAGAATGTTGATTTCCTTGGCAAACCTGACACAAGCCTTAGGTACAAGAAGTGCAGCAAAGCAGTGACAAATGATGATGAGTTCTTCCGGCGTAGAGACGATGTTCTTGCTGATTTGCAAGCAGCTAATGGATTTGGAGTCAGTACTTCAGGTTTTGTTGAAGGGTTTGCACTGTGCTTGGGAGATTTAAGTGTGGCTGATTGCTCCTCGTGCCTTGCAGAAGCAGTGGGAAAGCTTAGGAGTATATGTGGATCAGCAGCATCAGCTGATGTGTTCTTGGCACAATGTTATGCTCGGTACTGGGAAGCTGGCTACTATGATGAAGCAGAATCTTCCGACGACGATGACCAAGTGGGGAAATCAGTTGCCATTATTGTGGGAGTACTAGCAGGTCTAGCCATTCTAGTTGTCCTTCTCTCAATATGCCGAAGAGCAATGGGTTAA 870 0.4276 MSITLQLDSTHTIALALKLSYMLFLFSSIPSAQGYTARAHIFIYAACSQEKYQPNTPFEANLNSFLSSVAGSPSDISYNSFAIGNGSSSPPEGSIYGLYQCRVDLRPIECSKCVKSCVNQIGLVCPLALGASLQLEGCYLRYENVDFLGKPDTSLRYKKCSKAVTNDDEFFRRRDDVLADLQAANGFGVSTSGFVEGFALCLGDLSVADCSSCLAEAVGKLRSICGSAASADVFLAQCYARYWEAGYYDEAESSDDDDQVGKSVAIIVGVLAGLAILVVLLSICRRAMG 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2561 289 ProSiteProfiles Gnk2-homologous domain profile. 40 147 IPR002902 -
Ssu4g2561 289 Gene3D - 39 147 IPR038408 -
Ssu4g2561 289 Gene3D - 153 245 IPR038408 -
Ssu4g2561 289 PANTHER PLASMODESMATA-LOCATED PROTEIN 8 14 288 - -
Ssu4g2561 289 Pfam Salt stress response/antifungal 160 242 IPR002902 -
Ssu4g2561 289 Pfam Salt stress response/antifungal 47 144 IPR002902 -
Ssu4g2561 289 PANTHER ANTIFUNGAL PROTEIN GINKBILOBIN-2-LIKE 14 288 - -
Ssu4g2561 289 ProSiteProfiles Gnk2-homologous domain profile. 149 247 IPR002902 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2561 Ssu-Chr4 65008505 65011157 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2561 37 281 Receptor kinase-like Gene Family AT4G21230 23.843 6.46e-15 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2561 - - gmx:100809227 498.049