Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2535 ATGAAGTTTGGAAAGAGACTGAAGCAACAAATTCAGGAGTCGCTGCCGGAGTGGAGGGACAAGTACTTGTCGTACAAGGAATTGAAGAAGCTCGTGCGGCTCATATCGGAGGCACCAACGTTGCTGAATGGGTCGCTGGAATATGGCAAGACGGAGGCCGAGTTTATCTACTTGTTGAACAGTGAAATAGACAAGTTCAATGGGTTCTTCATGGAAAAAGAGGAGGATTTCATCATCCGCCATATGGAAGTACAACAGAGAATCAAGAGAGTAGTTGATTTATGGGGACCAAATGGTAGTCAACCTTCAGAAGCTGATTATAAGGAGGAGATGGCAAAAATCAGAAAAGCTATGGTTGATTTCCACGGTGAAATGGTTCTCTTGGTAAATTACAGCAACATCAATTACACAgGGTTGGCTAAAATTCTGAAGAAATATGACAAGAGGACAGGAGGGCTTCTGCGTTTGCCATTCATTCAGAAAGTGCTGGAGCAGCCCTTTTTCACAACAGATTTAATTTCAAGACTTGTGAAGGAATGTGAAAGCATAATTGATGCAGTGTTCCCAGCTGAGGAAGAAGCTGAAAGAGCAAAGGAAGCAAAAGAGGCCATCATAGTAGCCAGAGAAGGGATTTTCAGAAACACAGTTGCAGCTTTACTTACAATGCAAGAGATCAGAAAAGGTAGCTCCACACAGAGTCCTTTTTCTCTGCCTCCCCTCAACTTGCCAGAATCTGATCTCATTCAAGCAATACAGCTCAATGCTGCTGTTCCCATTGTCTGGTGA 786 0.4338 MKFGKRLKQQIQESLPEWRDKYLSYKELKKLVRLISEAPTLLNGSLEYGKTEAEFIYLLNSEIDKFNGFFMEKEEDFIIRHMEVQQRIKRVVDLWGPNGSQPSEADYKEEMAKIRKAMVDFHGEMVLLVNYSNINYTGLAKILKKYDKRTGGLLRLPFIQKVLEQPFFTTDLISRLVKECESIIDAVFPAEEEAERAKEAKEAIIVAREGIFRNTVAALLTMQEIRKGSSTQSPFSLPPLNLPESDLIQAIQLNAAVPIVW 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2535 261 PANTHER SPX DOMAIN-CONTAINING PROTEIN 3 1 258 IPR031142 GO:0016036
Ssu4g2535 261 PANTHER SPX DOMAIN-CONTAINING PROTEIN 3 1 258 - -
Ssu4g2535 261 Pfam SPX domain 101 161 IPR004331 -
Ssu4g2535 261 Pfam SPX domain 1 36 IPR004331 -
Ssu4g2535 261 CDD SPX_AtSPX1_like 2 149 - -
Ssu4g2535 261 ProSiteProfiles SPX domain profile. 1 160 IPR004331 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2535 Ssu-Chr4 63932929 63937001 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2535 - - vun:114166417 467.618
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g2535 4 63932929 63937001 Ssu4g2535 4 63932929 63937001 ECH