Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2534 ATGGCCATCTCAAACACTCATACCCTTTTCCTCACTTCACCAGGAATGGGTCACATAATCCCTGCCCTAGAACTTGCCAAGCGCTTAGTTACTCACCAAATCATTCCCAAACTGACCATCTTTCATGGCACAATCAAAACCTCTACTCCCTCCAAAGCCGAGACCCAAGTTCTCCACTCAGCCATGAAGGAAAACCTCTTGGATATCATCCAACTCCCCCCAATTGACCTCACCAACCTAGTTGGGCCCCATGCCACCGTAGAAACCAAGATAGCAACCATAATGCACGAAATCCCCCGACTCTTTGTGTCCACAATCTCCACCATGGACCTCAACCCAACCATGATCATCACCGACTTCTTCCTTAGCCAGGTTATACCTCTACTTGAAAATCCAAACCTACCCATGTTTGCTTTTGCACCAACAAACGCGTGGCTCCTAGCACTTGGTCTTCATACTCCCAccttggataaaaaaatacaaggagaATATATCAATCAAATTAAACCAATCTCAATCCCAGGTTGCACACCCCTACACCCCCATGATTTGTTCCAAATGTTGAAAGACAGGACACACAGGTTGTACCATGAATTTGTTGGCGCGTGTGAGGGGGCAGCACGGGCTACCGGGATCTTTGTGAACACGTTTCCCGAGTTGGAACCTAGGACACTTGAAGCACTCGGTGGTGGGCACATCACCAAGGTGCCCGTGTACCCGGTTGGGCCAATAGTAAGGGAAGGAGGCCCAAGTTGTGATGAGGGAAAGAGAAGTTGTGTTGTTGAGTGGCTAGACAAGCAAGAAGAAGAGTCCGTGATATATGTGTCACTTGGGAGTGCGTACACAATGTCATCTGAGGAAATCAAAGAGATGGCTTTGGGGTTGGAGCTAAGtggaaaaaaatttgtttggtcTGTGCGCCCAGCTGTCATCAAAGCCGGCCATGATCACTATTTCACGGCAGGTGAGGAAAGTGAAACTGGAACTACCCTTGTGTCTAATCTTGAACCATCAAATTCTTTTCCCGATGAGTTCTACCGCATACAAACCAACGGGATTGTGATCACAGATTGGGCACCACAATTGGATATTTTGAAGCACCCATCGGTTGGTGGGTTTGTGTCTCACTGTGGATGGAACTCAGTGATAGAGAGTGTTTCATGTGGGGTGCCCATAATTGGATGCCCCCTTTATGCAGAGCAAATGATGAATGCCACAATGCTAGCGGAGGAAGTTGGCAACGCAATTCGAGTAGAGGTGTCATCATCTACCAACATGGTTGGAAGGGAGGAGCTAGCAAAAGCAATTAGGAAGACAATGGATAAGGAGGACAAAGAAGGATGTGTAATGAGGGAAAAGGCTAAAGAGCTCAAACACATGGCAGAAAGAGCTTGGTCTCGGGATGGTGCTTCTTATTTTGCACTTTCAAAAATCAGTCACTCAAATGGCGTGTGA 1455 0.4612 MAISNTHTLFLTSPGMGHIIPALELAKRLVTHQIIPKLTIFHGTIKTSTPSKAETQVLHSAMKENLLDIIQLPPIDLTNLVGPHATVETKIATIMHEIPRLFVSTISTMDLNPTMIITDFFLSQVIPLLENPNLPMFAFAPTNAWLLALGLHTPTLDKKIQGEYINQIKPISIPGCTPLHPHDLFQMLKDRTHRLYHEFVGACEGAARATGIFVNTFPELEPRTLEALGGGHITKVPVYPVGPIVREGGPSCDEGKRSCVVEWLDKQEEESVIYVSLGSAYTMSSEEIKEMALGLELSGKKFVWSVRPAVIKAGHDHYFTAGEESETGTTLVSNLEPSNSFPDEFYRIQTNGIVITDWAPQLDILKHPSVGGFVSHCGWNSVIESVSCGVPIIGCPLYAEQMMNATMLAEEVGNAIRVEVSSSTNMVGREELAKAIRKTMDKEDKEGCVMREKAKELKHMAERAWSRDGASYFALSKISHSNGV 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2534 484 ProSitePatterns UDP-glycosyltransferases signature. 358 401 IPR035595 -
Ssu4g2534 484 PANTHER GLYCOSYLTRANSFERASE 4 480 - -
Ssu4g2534 484 PANTHER UDP-GLYCOSYLTRANSFERASE 72E1 4 480 - -
Ssu4g2534 484 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 7 475 - -
Ssu4g2534 484 CDD GT1_Gtf-like 7 464 IPR002213 GO:0008194
Ssu4g2534 484 Pfam UDP-glucoronosyl and UDP-glucosyl transferase 247 450 IPR002213 GO:0008194
Ssu4g2534 484 Gene3D Glycogen Phosphorylase B; 7 471 - -
Ssu4g2534 484 Gene3D Glycogen Phosphorylase B; 258 466 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2534 Ssu-Chr4 63909221 63911525 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2534 7 475 Glycosyltransferase AT2G18570 41.387 6.04e-123 365
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2534 K12356 - gmx:100813780 761.525