Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2533 ATGATCACGATCTCTGCAACCTCCTCACCAAACACCGAAACCAAACAAACCTTCTCAATGGCTCACCACCAACTCATCGACACCCTCGCCTCGCACATCTCCCTGTACCACTCCCAATCCCCAAACCATGACCCCaaccctaaccctaaccctCGATCCTCCATCCTCAAGTGGTTCTCCTCGCTCTCCGTGCACCACCGCCAGGCCCACCTCACCGTCGTCGACGCCGGCTTCGTCCAGATCCTCCTCCGCATGCTCGCGAAGCTCCGATCGCACGGCCAGGGCTCCTTCATCCTCCTCCCGGACCTCCCCTCCCGAAGCCCCCCCTTCCTCCCGACCCTCTGCTTCAAGAAGTCCCGCGGCCTCCTCGCGCGCGTCGCCGGCTCCGACGCCGCCGGGCGGCTCCTCTTCGAGTCCGCCCGGCTGTTCGAGTCGCGCGAGGGCGAGGAGGCCGCCTCCGCCGCTGCCGTGGCCTCCTCTCACCGCCTCGACGCGCTGACGCTCGCCGAGGGGCTTGTCGGGGACGTGGACCGGTTCGTGGACGCCATGGACCGGGTCTCCGGCGGCGGCTTCCTCCGCGGGGAGGAGGGCGAGCTCGGCGAGGACTGGGTGGAGCTGCATTGGCTGAAGGCGAAGGGGTACTACGGAGTTGAGGCGTTTGTTGCGAACAGGATTGAGGTTGCGATGAGGTTGGCGTGGCTGAACTGCAGCGGAGGGAGGAAGAGGGGTGTGAAGTTGAAGGAGAAGTTGAGTGCGGCGGGGGTGGGCGTGAATGTGTTTTGGAGGAAGAAGGGGTGCGTGGATTGGTGGGGGAATTTGGATGCCGGGACCAGGAAGAAGGTCTTTTCCACCTTCATGATGAAAGCTGCAAAACCCTTGACTCGTGAGGTTTTGGAAGTGGCAAGTAGTGCCTCTGATGATGAGATTTGGCTATACAGTGCGGGAGTGGATAAATTACAGCAACACAATCGTCCTGTGTCAGCTCAACGGACCATCCCAGCCCTTCGTGCTGATATGGAATTTGGAACAGTTATTTCACCAGTCACTTTTTGTAAAAAACCTGCTGCTTTAGCCAGAGCCTTTTATTCTTTATCTGTACTTCAGGATGTTAATATGATGGTAACATCAAGTCTTAATAGTGAATACGATGTACGAAAGCTTTTCTATAGTTCGTTGGGTTCTGTCTGTACGATATCTGATTGTATATTAAGAAAACTGCGAGGATTTCTGATGGTTATTTCACTTGACTGCACAAAACTTGAACTATTAGGAGAGGAACATAACAAGTCTTCATCAGGTAAACCTAAAGAAAAGCTTAATGTTTCTAACCGTAAAAAAAAGGGACGAAACCGCAATACTAAAAGGCAAAATCCTGTTTCAAAGACATGCGTGGATGAACGTCAAAATCTACTCAAGGACATTGATTGTGGGGTGGATAATAAAAAGAAGACTGATTTAGTGGGATCCAGGGAACTTCCTGCTGTTCACATGGGGAAGGAGATTTCTATGGAGTGCTCATCATCAACTGTAAAAATGGATCATACTCAAGGATTGGATGTTGGCAAAGTACGAACCACTCCaagaagaagtagaaaagagaaaaataaaagtaaaaacattcCCATTGATAGTGCAGGTGGAGATTCTCAAAAGTCAACTATGAATGCTGCCTCTACCACTGTTATTTCTGAAGGTCAGGTGGCAATATGTGATAGGTTTTTAGATAGTTCTACCATTCAGAATGTCAAAAATGACAATTCAATTGGTAATGACATCCTTGCTTCAAATTCAAGCCTTTGTAGTTCTCTTAGTGGGCTTACTAAGGAGAACAGTTCTACCAGGAAAGTTGAACGAGAGACAGAAGATCTTGCTGAAAGTGGCAATAGTTTAGGTCCTCAGTGTTGTTTATTGTCAGATGAAAGGAAAACTTTATGTTCTGGATTAGATACTTTAACTGTAGATTGTAATGCTGCTATAACTCCTCCTGTACCTTCATTGAAACATGGTAGTTTCTTCAGCAAGGAGAATACCTGTCCTTTGAACTCATTGTGTGCTGCCAAAGCTGATATAAAGTCAACTGTTCCTGACAAACCAATTAGAGAGGTTAATGTAAAAGAATTTGGGCTGTTGAAGGAGCATGATAGATGTTTATTTGAAAGTAGAAATTCAGCTTTCTCAAAGTGCAGCCCATATGAGTGGCCTGGGGTACCTTCTATCTATTTTCCATCTTTTAACTCACATCTCCCTCCTGCCACAGATAGATTACATCTGGATGTTGGGCGCAATTGGCATAATCACTTCTGCCACCCATTTGTTCCGACATTACAGCAGGCAAGAAATCCACCTATTGAAGGTGGATGCAACCCAATCCTGTCTCGTCCTATTCCTATGAGTTTCGACTGGCCCCCAGTTTTTCGTGGTGGCATGACCCCATCACCAAACTATAACTATGACTCTGGTTTTATATCTAGGCAGCAATGTACCTTTTCCAAAGGATTGGCTGTTCACAGCATGCAGGTTGATGCGACTGCTCCTGATGATGGAAGAAAATATTCTGGGGATGTATGGGATTTACCTGATCTTACAAATACATTGGAGCTAGCAGATGAATTCGACAATCACTGTGTATCTGAGGAAGAGTATGAGGTTCATACTGTTTCTGGCATagattataatcaatattttggtGGAGGCACAATGTACTGGAACCCTTCTGATTATCCAGGGAAAGGTTTCTCCCGGCCTCCATCGCTTAGCTCTGATGACAGTTTATGGGCTTTGCGTGAAGCTGACATGAATAGGACAGTGGATGACATGGTTGCTTTCTCATCTTCGTATAGTACGAATGGTTTGACGTCACCCACTGCTGCTACATTTTGTTCTCCTTTCGATCCTGTAGGGACTGGGACCCAGACTGTTGGTTATGTGATGTCAGGTAATGAAATACCTGGAAAGATGTTGCATTCTTCATCAGTTACAGATGCAGCAGTGGATGAAGATACCTCTGGTTCATTGGGTAATAATTTGCCTGGAGAAGTTGAAGGAAAGACAGGCGATTCACATCCGTATCCCATTCTACGGCCAATAATTATTCCTAACTTGTCAAGGGAAAGGTTTGATCATAAAAGTCCGTGTGTTCCTCCCACCAGGCGGGAGCAGCCTCGCATAAAGCGGCCACCATCACCTGTAGTGCTTTGTGTACCACGTGCACCACGTCCACCCCCGCCTTCCCCTGTGAGTGACTCCAGGAAGCACAGGGGTTTTCCAACGGTTAGGTCTGGTAGTTCCAGCCCAAGGCACTGGGGAATGAGAGGCTGGTATCATGATGGGAGTAATTTGGAGGAAGCATGTTTAAGAATGGATGGTGCTGAAGTTGTGTGGCCTTGGAGAAGTAATAATCTTGCGGTGCGACCTCTGATTCAGCCTTTACCTGCTGCCTTGCTGCAGGACCGCCTGATTGCATTGTCACAGATAGCACGTGACCAGGAACATCCAGATGTCACCTTTCCTTTGCAACCTCCTGAGTTACAAAGCTGTTCTGTACAGAGTgcatctttatctttgatgcaTGGCATTCTCCATGATGAGATTGACTCTTTCTGTAAACAGGTTGCTGCAGAAAATATGGCCAGGAGGCCTTATATTAATTGGACTGTCAAGAGAGTTACCCGATTTCTGCAGGTTCTGTGGCCCAGATCCCGGACAAACATATTTGGTTCAAATGCAACTGGTATGTCCCTTCCAACAAGTGATGTTGACCTTGTGGTTTGTCTCCCTCCAGTGAGGAACCTggAACCTATTAAAGAAGCTGGAATACTGGAAGGTCGTAATGGTATCAAAGAAACGTGTCTACAGCATGCAGCTAGGTATCTTGCCAATCAGGATTGGGTGAAAAATGATTCTCTGAAGACAGTGGAAAATACAGCTATTCCTATTATTATGCTTGTGGTGGAAGTACCTCAGGATGTTATTACTTCGTCGGCTCCTATGATACAGTCATTAAATGAAGAGCCACGTTGTACTCCTGGTGAACATGGTAATGACAATCATTCTGATACCATCCAGTTAGAAGATTTGGCTTTGCAAAAAGGCTCCCAAATGAAATTTGATGCCTTGAAATCAAAATCAGTTCGTCTGGACATCAGCTTTAAGTCCCCGTCACATACTGGACTCCAAACTACAgaaatgGTTAAGGAGTTGACAGAGCAATTTCCTGCTGCTACACCTCTTGCTTTGGTACTAAAACAGTTTTTGGCTGATCGGAGCCTTGATCAATCCTACTCTGGTGGCTTAAGTTCCTACTGTTTGGTCTTACTAATTATACGATTTCTTCAGCATGAGCACCATCTTGGACGGCCAATCAACCAAAATTATGGAAGCCTTCTGATggattttctttacttttttgggaATGTGTTTGATCCTCGCCAAATGCGGATATCAGTTCAGGGAAGTGgactttatataaaaagagaaagaggttGTAGCATTGATCCAATTCACATAGATGATCCTCTTTTTCCAACTAATAATGTGGGAAGAAATTGCTTCCGAATACATCAATGTATTAAGGCATTTTCAGAAGCTTACTCTGTTCTTGAAAATGAACTCAAATTTCTAAATAGTGATGGTGAGTCATGTTCAAGGCCACCTTACAGATTGCTTCCAAAAATCATTCCAAGTCTTGATATTTCATAA 4698 0.4504 MITISATSSPNTETKQTFSMAHHQLIDTLASHISLYHSQSPNHDPNPNPNPRSSILKWFSSLSVHHRQAHLTVVDAGFVQILLRMLAKLRSHGQGSFILLPDLPSRSPPFLPTLCFKKSRGLLARVAGSDAAGRLLFESARLFESREGEEAASAAAVASSHRLDALTLAEGLVGDVDRFVDAMDRVSGGGFLRGEEGELGEDWVELHWLKAKGYYGVEAFVANRIEVAMRLAWLNCSGGRKRGVKLKEKLSAAGVGVNVFWRKKGCVDWWGNLDAGTRKKVFSTFMMKAAKPLTREVLEVASSASDDEIWLYSAGVDKLQQHNRPVSAQRTIPALRADMEFGTVISPVTFCKKPAALARAFYSLSVLQDVNMMVTSSLNSEYDVRKLFYSSLGSVCTISDCILRKLRGFLMVISLDCTKLELLGEEHNKSSSGKPKEKLNVSNRKKKGRNRNTKRQNPVSKTCVDERQNLLKDIDCGVDNKKKTDLVGSRELPAVHMGKEISMECSSSTVKMDHTQGLDVGKVRTTPRRSRKEKNKSKNIPIDSAGGDSQKSTMNAASTTVISEGQVAICDRFLDSSTIQNVKNDNSIGNDILASNSSLCSSLSGLTKENSSTRKVERETEDLAESGNSLGPQCCLLSDERKTLCSGLDTLTVDCNAAITPPVPSLKHGSFFSKENTCPLNSLCAAKADIKSTVPDKPIREVNVKEFGLLKEHDRCLFESRNSAFSKCSPYEWPGVPSIYFPSFNSHLPPATDRLHLDVGRNWHNHFCHPFVPTLQQARNPPIEGGCNPILSRPIPMSFDWPPVFRGGMTPSPNYNYDSGFISRQQCTFSKGLAVHSMQVDATAPDDGRKYSGDVWDLPDLTNTLELADEFDNHCVSEEEYEVHTVSGIDYNQYFGGGTMYWNPSDYPGKGFSRPPSLSSDDSLWALREADMNRTVDDMVAFSSSYSTNGLTSPTAATFCSPFDPVGTGTQTVGYVMSGNEIPGKMLHSSSVTDAAVDEDTSGSLGNNLPGEVEGKTGDSHPYPILRPIIIPNLSRERFDHKSPCVPPTRREQPRIKRPPSPVVLCVPRAPRPPPPSPVSDSRKHRGFPTVRSGSSSPRHWGMRGWYHDGSNLEEACLRMDGAEVVWPWRSNNLAVRPLIQPLPAALLQDRLIALSQIARDQEHPDVTFPLQPPELQSCSVQSASLSLMHGILHDEIDSFCKQVAAENMARRPYINWTVKRVTRFLQVLWPRSRTNIFGSNATGMSLPTSDVDLVVCLPPVRNLEPIKEAGILEGRNGIKETCLQHAARYLANQDWVKNDSLKTVENTAIPIIMLVVEVPQDVITSSAPMIQSLNEEPRCTPGEHGNDNHSDTIQLEDLALQKGSQMKFDALKSKSVRLDISFKSPSHTGLQTTEMVKELTEQFPAATPLALVLKQFLADRSLDQSYSGGLSSYCLVLLIIRFLQHEHHLGRPINQNYGSLLMDFLYFFGNVFDPRQMRISVQGSGLYIKRERGCSIDPIHIDDPLFPTNNVGRNCFRIHQCIKAFSEAYSVLENELKFLNSDGESCSRPPYRLLPKIIPSLDIS 1565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2533 1565 Pfam Nucleotidyltransferase domain 1220 1263 IPR002934 GO:0016779
Ssu4g2533 1565 SUPERFAMILY PAP/OAS1 substrate-binding domain 1405 1537 - -
Ssu4g2533 1565 Gene3D Beta Polymerase, domain 2 1207 1324 IPR043519 -
Ssu4g2533 1565 MobiDBLite consensus disorder prediction 1040 1057 - -
Ssu4g2533 1565 MobiDBLite consensus disorder prediction 524 554 - -
Ssu4g2533 1565 Gene3D - 1363 1559 - -
Ssu4g2533 1565 MobiDBLite consensus disorder prediction 426 462 - -
Ssu4g2533 1565 SUPERFAMILY Nucleotidyltransferase 1195 1400 IPR043519 -
Ssu4g2533 1565 Coils Coil 1523 1543 - -
Ssu4g2533 1565 PANTHER POLY(A) RNA POLYMERASE 685 1561 IPR045862 GO:0004652|GO:0031499|GO:0043631
Ssu4g2533 1565 MobiDBLite consensus disorder prediction 1040 1096 - -
Ssu4g2533 1565 MobiDBLite consensus disorder prediction 997 1021 - -
Ssu4g2533 1565 PANTHER NUCLEOTIDYLTRANSFERASE FAMILY PROTEIN 685 1561 - -
Ssu4g2533 1565 MobiDBLite consensus disorder prediction 1064 1080 - -
Ssu4g2533 1565 MobiDBLite consensus disorder prediction 440 454 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2533 - - ccaj:109818618 2355.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g2533 4 63874683 63886905 Ssu4g2533 4 63874683 63886905 ECH