Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2528 ATGTGGACGCAGCGAGTGCTGCCTCTACCACCCCAGAAACCGTTCCTTTGTTCCCCTTCAAATGTCACAAAGAACCCATCTTTTGTGAACGGTAAAAATGGTTATTGCAGAGTAAAGGCAATAACTTTGGATGAACTTCCCCCAAACGCGCTTCGAAAGAAGAGAGAGCCGCAATGGAGAGGAGGCTTCAGCCTTGGACTCGACTTGGGATTGGCCCGTACTGGCCTTGCCCTCAGCAAAGGCTTCTCTATTCGCCCCTTAACCGTGTTGGAACTGCGAGGACAGAAGCTTGAGGTTCAGATTATGAACATTGCTGAACAAGAGGAGGTTGACGAGTTTATAATTGGACTTCCGAAATCTTCTGATGGGAAGGAAACGCCACAGTCAAACAAAGTCCGAAGTGTCGCTGGAAGGCTTGCTGTTCGAGCTGCTGAGAGGGGCTGGAGAGTATATCTACAGGATGAACATGGGACAACAACAGAAGCCGTAGATCGAATGATCAAcatGGGGTTAAGTAAGTCCTCTCAGCAGAAGAAACTTGATGCCTATGCTGCCATGATGGTACTGGAGAGATATTTCTCCACATCAGGTCAGGGTACTGAACTTGTTTTGCCCAAGAATCTAGAATTACAAGTAAAACTTCAAAAGGGTCCTCCCAAAGATGTTGATTTTTTCTCGGATGAAGATTAA 690 0.4652 MWTQRVLPLPPQKPFLCSPSNVTKNPSFVNGKNGYCRVKAITLDELPPNALRKKREPQWRGGFSLGLDLGLARTGLALSKGFSIRPLTVLELRGQKLEVQIMNIAEQEEVDEFIIGLPKSSDGKETPQSNKVRSVAGRLAVRAAERGWRVYLQDEHGTTTEAVDRMINMGLSKSSQQKKLDAYAAMMVLERYFSTSGQGTELVLPKNLELQVKLQKGPPKDVDFFSDED 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2528 229 Gene3D - 64 201 IPR037027 GO:0006139
Ssu4g2528 229 PANTHER POLYNUCLEOTIDYL TRANSFERASE, RIBONUCLEASE H-LIKE SUPERFAMILY PROTEIN 20 228 - -
Ssu4g2528 229 SUPERFAMILY Ribonuclease H-like 63 195 IPR012337 -
Ssu4g2528 229 CDD YqgF 65 193 IPR005227 GO:0006364
Ssu4g2528 229 TIGRFAM RNAse_H_YqgF: putative transcription antitermination factor YqgF 65 193 IPR005227 GO:0006364
Ssu4g2528 229 PANTHER POLYNUCLEOTIDYL TRANSFERASE, RIBONUCLEASE H-LIKE SUPERFAMILY PROTEIN 20 228 IPR005227 GO:0006364
Ssu4g2528 229 Hamap Putative pre-16S rRNA nuclease [yqgF]. 62 197 IPR005227 GO:0006364
Ssu4g2528 229 Pfam Holliday junction resolvase 64 194 IPR005227 GO:0006364
Ssu4g2528 229 SMART rnase_8s 62 162 IPR006641 GO:0006139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2528 - - gmx:100810356 424.091
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g2528 4 63844534 63847572 Ssu4g2528 4 63844534 63847572 ECH