Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2527 ATGAGGGTGCATGAAGAATTGCAAAGGCGCAATGCTATAAATGGACAACAGAGTGGGCAGACTCCTACCTCTCAATTGAATTTAACAGATCAACCTAAGAAAGTTCAGGAGTCTGAGAAAAATGGATGCCCCACAGAAAATATGGGCTCTGGGGTTATAGTCGATAATCACAAGGAGGAAATACAGATGCAGAATAATGCAGGAAACATTTCTGAGGTTCCAGCCAAAGTGCCTGAGGGGAAAACTGGGGATAACTCTGCTGTAAGAGGCCGAGGATTGAAgcggaagaagaaaggaggaaaaGGAGGTAAATACATGAGAACTAATGATGGTTCAAAGCCAGTGGAACCTGCACAAACTGTGTCTTTTAGATGTGAGTTGTGTGATGTTAAATGTGAGTCGCAAGTTGTTTACCAGAGTCATGTGACTGGGAAAAAGCACTTATCAAGACTGAAGCGTGCTCATGATCACCAAGCTTCATCTGGAGTAGGCCAGCAGCAAGCTCTGTCTGGAGGTCACTTTGGGCTGCAAGCACTTTATCCACCTGACATCAATGCTCTGTCTAATGCAATTAATGCTCAAGTCCAACAAGGTGATAATGATCCACAGGTACTTTTGGCTCAACTCCTGATGACTGTACTATCTCAAGCACAGCTCCCAGCAACAGCACCGGTGACAGGCGCCATGGCTGCTCAGATACCAGCTCCCACATCTATGGCTGGACCAAGTTATGAACCCCGGTTGTTGCAGACACAAGTATCAGAAATCACAGCACATGTTAAGATGGAAAATCCTTCTGGGGAAACAAAAACTGAGCTGTTACCTGTCCCACTGGGGTCAAACGCTCAGCCAGGTTCAACTGTCAGCACCCAAATTGAAGGTGGAGGTTCTGAAACTAAACAACAGGTGTAA 912 0.4463 MRVHEELQRRNAINGQQSGQTPTSQLNLTDQPKKVQESEKNGCPTENMGSGVIVDNHKEEIQMQNNAGNISEVPAKVPEGKTGDNSAVRGRGLKRKKKGGKGGKYMRTNDGSKPVEPAQTVSFRCELCDVKCESQVVYQSHVTGKKHLSRLKRAHDHQASSGVGQQQALSGGHFGLQALYPPDINALSNAINAQVQQGDNDPQVLLAQLLMTVLSQAQLPATAPVTGAMAAQIPAPTSMAGPSYEPRLLQTQVSEITAHVKMENPSGETKTELLPVPLGSNAQPGSTVSTQIEGGGSETKQQV 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2527 303 MobiDBLite consensus disorder prediction 264 303 - -
Ssu4g2527 303 Pfam Zinc-finger of C2H2 type 123 147 - -
Ssu4g2527 303 SMART ZnF_U1_5 120 154 IPR003604 GO:0003676|GO:0008270
Ssu4g2527 303 MobiDBLite consensus disorder prediction 72 116 - -
Ssu4g2527 303 MobiDBLite consensus disorder prediction 280 303 - -
Ssu4g2527 303 PANTHER OS06G0651300 PROTEIN-RELATED 1 272 - -
Ssu4g2527 303 MobiDBLite consensus disorder prediction 10 32 - -
Ssu4g2527 303 MobiDBLite consensus disorder prediction 1 48 - -
Ssu4g2527 303 PANTHER GLUTENIN, HIGH MOLECULAR WEIGHT SUBUNIT 12-LIKE 1 272 - -
Ssu4g2527 303 Gene3D Classic Zinc Finger 103 154 - -
Ssu4g2527 303 SUPERFAMILY beta-beta-alpha zinc fingers 115 153 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2527 Ssu-Chr4 63840975 63841886 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2527 - - gmx:100794880 454.907
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g2527 4 63840975 63841886 Ssu4g2527 4 63840975 63841886 ECH