Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2487 ATGGAGGAAAGAGTGGGGCTTTTGTTTCTGATTTTGTTGGGTGCTGCTTGGGCTTGTGATGCGAGAGAGCTAGCAAACTCTGAATTAAACAGAAAATCAGATGTCTGTGCACTTTGTGAGGAATATACTGCCAAGGCACTTGATTATCTAAATGATAAAGAGACTCAGAGAGAGGTCATTGATGCCCTTCACAATACTTGCTATCAGCTCCTCTCTTTCCAAGATCAGTGCATCGAATTGGTGGATGATTATGCTTCACGTTTCTTCTCAGAAATTGCATCAGTTTTGCCCGGAGAACTCTGCAAACAGGTCTACCTCTGTCAATCTGCAAATATTTCTTCACAAGTTCAAGGAAATACCTGTGGCTCTTGCAAAGATACTGTTGCAGCCTTACTGGTCAGGTTGAAAGATCCTGACACCAAGCTTGAGATAATGGAGGCATTGTTGAAAGCATGCAATTCTATGGACAAGTTGGCGAAGAAGTGCAAGAGGATGGTTTTTGAGTATGGACCATTGATTCTTGTCAAGGCAGAGAAGTTCCTGAAAACAACAGATATATGCACTGCATTACATGCCTGCCCTGCTTCCACTGCTGTTAGCAAGGGAGCCTCAATCATTGAAGATGTACCTTTGATTTCTGACTCTTAA 648 0.4259 MEERVGLLFLILLGAAWACDARELANSELNRKSDVCALCEEYTAKALDYLNDKETQREVIDALHNTCYQLLSFQDQCIELVDDYASRFFSEIASVLPGELCKQVYLCQSANISSQVQGNTCGSCKDTVAALLVRLKDPDTKLEIMEALLKACNSMDKLAKKCKRMVFEYGPLILVKAEKFLKTTDICTALHACPASTAVSKGASIIEDVPLISDS 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2487 215 PANTHER SAPOSIN-RELATED 1 201 - -
Ssu4g2487 215 SUPERFAMILY Saposin 33 109 IPR011001 -
Ssu4g2487 215 SMART sapb_4 119 193 IPR008139 -
Ssu4g2487 215 SMART sapb_4 34 107 IPR008139 -
Ssu4g2487 215 Pfam Saposin-like type B, region 2 160 193 IPR008138 -
Ssu4g2487 215 Gene3D - 116 196 - -
Ssu4g2487 215 Gene3D - 31 108 - -
Ssu4g2487 215 Pfam Saposin-like type B, region 1 120 155 IPR007856 GO:0006629
Ssu4g2487 215 Pfam Saposin-like type B, region 1 34 70 IPR007856 GO:0006629
Ssu4g2487 215 PANTHER SAPOSIN-RELATED 1 201 - -
Ssu4g2487 215 ProSiteProfiles Saposin B type domain profile. 117 197 IPR008139 -
Ssu4g2487 215 SUPERFAMILY Saposin 118 195 IPR011001 -
Ssu4g2487 215 ProSiteProfiles Saposin B type domain profile. 32 111 IPR008139 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2487 Ssu-Chr4 62571655 62575518 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2487 K12382 - gmx:100527899 351.673
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g2487 4 62571655 62575518 Ssu4g2487 4 62571655 62575518 ECH