Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2484 ATGTTGAGGTGCATCAATGGAAGAATTGCCAGAAGATTTTTATCCACTTCTTGTGCCAGTGCCCGTGGTTGGTGGGACCATGTGAGACCAGCACCGAAGGACCCCATTGTCAGTGTCAACGAGGCCTTTCTAGATGACCCTTTTCCCCACAAGATCAATCTTGGAATTGGAACTTACAGGGGTGATGATGGCAAACCTTTCGTTCCTCAATGCGTTCGTGATGCAGAAATGAAGATTCAGAGATGTAAATTGGAGGAGTCAAACTCTTCTGCAGTCAGATCAAAATTTGTTCAGGAGTGTGTAAGATTGGCATATGGGAATGATTCAAATGTTGTAAGAGAAGGATTGTTTGCAGGAGTTCCAACTCTGTCTGGAACTGGTGCATGTAGGCTTTTTGCTGAATTTCAAAGGCATTTCTATCCTGATTCTCATATGTATCTACCAGATCCTACCTGGTCAAATCACCACAATATATGGGGACAAGCTGAAATTCCAGTCAAAACCTTCCACTACTACCATCCAGATACAAAGGGTTTAGATTTTGCAGCACTCCTAAATGATGTCAAGAATGCACCAGATTGTTCTTTCTTCTTGCTTCATCCATGTGCCCATAACCCAACTGGTGTTGACCCCACTGAGGAACAATGGAGAGAAATATCATACCAGTTCAAGGTAAAAAATCATTTCCCCTTCTTTGACACGGCTTATCAAGGATTTTCAAGTGGGGATCTTGACAAGGATGCCGTAGCACTTCGAATTTTCCTTGAAGATGGGCATTTGATAGGTTGTGCTCAATCATTTGCAAAGATCATGGGATTATCAGAACATAAAGTTGGTTGTCTTAGtGTTTTGTGCCAGAGTATAAAGCAAGCAGCTACACTAAAAAGCCAACTGCAGCTAATGTCCCATGCAATGTACAGCAGCATTCCTTTTCATGGTGTTTTACTAGCTACTATGATATTAAGCAACTCAGATATAGAAGCACTTTGGAGAAAAGAGATAAAGGTCATGGCTAAACGGATTCAAACTATGCGAACTACCCTTCGACGTCGTCTTGAGAACCTGGATTCATCTTTCAATTGGGAGCATATAACTGCCCAGGTTGGCATGTTCTGTTTTTCTGGATTAACCCCTGATCAGGTTAAACGGCTGGAGAAGCTGTTCCATATATACATGACTCCTGATGGAAGAATAAGCATGGCAGGTGTGACCACAAACAATGTGGATTATTTGGCAAATGCAATACATCAGGTAACCAGAATCGATGAAGAAACCTTAAGCTCATGTTACTTGTAA 1296 0.4182 MLRCINGRIARRFLSTSCASARGWWDHVRPAPKDPIVSVNEAFLDDPFPHKINLGIGTYRGDDGKPFVPQCVRDAEMKIQRCKLEESNSSAVRSKFVQECVRLAYGNDSNVVREGLFAGVPTLSGTGACRLFAEFQRHFYPDSHMYLPDPTWSNHHNIWGQAEIPVKTFHYYHPDTKGLDFAALLNDVKNAPDCSFFLLHPCAHNPTGVDPTEEQWREISYQFKVKNHFPFFDTAYQGFSSGDLDKDAVALRIFLEDGHLIGCAQSFAKIMGLSEHKVGCLSVLCQSIKQAATLKSQLQLMSHAMYSSIPFHGVLLATMILSNSDIEALWRKEIKVMAKRIQTMRTTLRRRLENLDSSFNWEHITAQVGMFCFSGLTPDQVKRLEKLFHIYMTPDGRISMAGVTTNNVDYLANAIHQVTRIDEETLSSCYL 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2484 431 Gene3D - 82 323 IPR015421 GO:0003824
Ssu4g2484 431 PANTHER ASPARTATE AMINOTRANSFERASE 13 423 - -
Ssu4g2484 431 CDD AAT_like 120 417 - -
Ssu4g2484 431 SUPERFAMILY PLP-dependent transferases 24 420 IPR015424 -
Ssu4g2484 431 PRINTS Aspartate aminotransferase signature 197 216 IPR000796 GO:0006520|GO:0008483
Ssu4g2484 431 PRINTS Aspartate aminotransferase signature 228 240 IPR000796 GO:0006520|GO:0008483
Ssu4g2484 431 PRINTS Aspartate aminotransferase signature 296 321 IPR000796 GO:0006520|GO:0008483
Ssu4g2484 431 PRINTS Aspartate aminotransferase signature 364 382 IPR000796 GO:0006520|GO:0008483
Ssu4g2484 431 Pfam Aminotransferase class I and II 50 415 IPR004839 GO:0009058|GO:0030170
Ssu4g2484 431 Gene3D Aspartate Aminotransferase, domain 1 34 415 IPR015422 GO:0003824
Ssu4g2484 431 PANTHER ASPARTATE AMINOTRANSFERASE 13 423 IPR000796 GO:0006520|GO:0008483
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2484 Ssu-Chr4 62506184 62509799 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2484 K14455 - gmx:100814593 815.068
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g2484 4 62506184 62509799 Ssu4g2484 4 62506184 62509799 ECH