Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2468 ATGACGGTGTTCCTAGCTACCAGGCTCGTGCCGCGACGATCGCCGTCGCTTTGCTGGCTACGCAGCTTTTCTCGGGCGGTGGTAGACACGGAAAAGGATGCCGTCGCCGCCCTGGAGCTTCCGCCGTTCGATTACTCCCCGCCGCCGTTTGCGGGGCCCACCGCCGGCGAGATTCTGGCGAAGCGCAAGGAGTATCTGAGTCCTTCCATCTACCACTTCTACAAGACCCCCGTGAACATAGTGGAGGGTAGGAAGCAGTACCTGTTTGACGAGAATGGGAGAAGGTACGTGGATGCGTTTGGAGGGATTGCTACGGTGTGCTGCGGGCACTGTCACCCTGATGTGGTCGAGGCCATAGTGAACCAAACTAAAAAGTTGCAGCACTCCACGGTTCTCTACCTTAACCACGCAATCGCCGATTTCGCTGAGGCTCTGGCTTCCAGGCTTCCCGGTAATCTCAAGGTGGTGTTTTTCACAAACTCTGGAACAGAAGCAAACGAATTGGCCATACTGATAGCAAGGTTATACACCGGGTGCCATGACATCATATCTCTAAGGAATGCTTACCATGGTAATGCAGCTGGGACAATGGGAGCCACAGCTCAAAGCATCTGGAAATTTAATGTAGTACAGAGTGGTGTTCACCATGCAGTAAATCCAGACCCTTATAGAGGCATTTTCGGTTCTGATGGAGAGAAATATGCAAGAGATGTCCAAGATATCATTAATTTCGGAACTTCTGGAAAAGTTGCAGCCTTCATATCTGAAGCCATACAGGGAGTGGGGGGTATCATTGAATTGGCTCCTGGTTACTTGCCAGCTGTGTACAATACCATAAAAAAAGCAGGAGGACTTTTTATTGCTGATGAGGTTCAGGCTGGCTTTGGTCGCATTGGTAGCCATTTCTGGGGATTTGAGGCCCACAATGTTGTTCCTGACATAGTGACAATGGCTAAGGGCATTGGAAATGGCATTCCCCTTGGTGCTGTTGTAACTACTCCAGAGATTGCAGAGGTCTTAGCTCGCCGATGTTACTTTAACACCTTTGGTGGGAACCCTGTTTGTACTGCTGCAGGGTTGGCTGTTTTAAAAGTAATAGAGAAAGAGCAGCTTCAACAAAATGCGTTTGTGGTTGGATCCTATTTGAAAGAGAGGCTCACTGCGCTCAAGGACAAATATGAATTAATTGGTGATGTGAGAGGAAGAGGCCTGATGCTAGGAGTTGAGCTTGTCACTGATCGTGAACTTAAAACTCCAGCAAATGCTGAAACATTGCATGTAATGGACCAAATGAAAGAATTAGGAGTACTTATTGGTAAGGGCGGTTACTATGGAAATGTATTCAGAATTACACCTCCCTTGTGTTTCAGCAAAGCAGATGCAGACTTTGTGGCAGACGCAATGGACTTGACCTTGTCTAGAATGTGA 1428 0.4832 MTVFLATRLVPRRSPSLCWLRSFSRAVVDTEKDAVAALELPPFDYSPPPFAGPTAGEILAKRKEYLSPSIYHFYKTPVNIVEGRKQYLFDENGRRYVDAFGGIATVCCGHCHPDVVEAIVNQTKKLQHSTVLYLNHAIADFAEALASRLPGNLKVVFFTNSGTEANELAILIARLYTGCHDIISLRNAYHGNAAGTMGATAQSIWKFNVVQSGVHHAVNPDPYRGIFGSDGEKYARDVQDIINFGTSGKVAAFISEAIQGVGGIIELAPGYLPAVYNTIKKAGGLFIADEVQAGFGRIGSHFWGFEAHNVVPDIVTMAKGIGNGIPLGAVVTTPEIAEVLARRCYFNTFGGNPVCTAAGLAVLKVIEKEQLQQNAFVVGSYLKERLTALKDKYELIGDVRGRGLMLGVELVTDRELKTPANAETLHVMDQMKELGVLIGKGGYYGNVFRITPPLCFSKADADFVADAMDLTLSRM 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2468 475 Pfam Aminotransferase class-III 76 469 IPR005814 GO:0008483|GO:0030170
Ssu4g2468 475 Gene3D - 112 369 IPR015421 GO:0003824
Ssu4g2468 475 Gene3D Aspartate Aminotransferase, domain 1 77 470 IPR015422 GO:0003824
Ssu4g2468 475 ProSitePatterns Aminotransferases class-III pyridoxal-phosphate attachment site. 286 324 IPR005814 GO:0008483|GO:0030170
Ssu4g2468 475 PANTHER - 30 475 - -
Ssu4g2468 475 PIRSF Transaminase_4ab_Lys_Orn 176 475 IPR005814 GO:0008483|GO:0030170
Ssu4g2468 475 PIRSF Transaminase_4ab_Lys_Orn 50 181 IPR005814 GO:0008483|GO:0030170
Ssu4g2468 475 SUPERFAMILY PLP-dependent transferases 69 472 IPR015424 -
Ssu4g2468 475 CDD OAT_like 59 469 IPR005814 GO:0008483|GO:0030170
Ssu4g2468 475 PANTHER ALANINE--GLYOXYLATE AMINOTRANSFERASE 2 HOMOLOG 3, MITOCHONDRIAL-LIKE ISOFORM X1 30 475 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2468 Ssu-Chr4 61911781 61921499 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2468 K00827 - gmx:100170733 890.952
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g2468 4 61911781 61921499 Ssu4g2468 4 61911781 61921499 ECH