Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2454 ATGAAGAAGCAGAAGCGCTCGGAGGTTCCAACGCAAAACGACAACCCGTTCGAGCTTCTCACGGAGGAGCTAATATTCACGGTCCTGGACTTTCTCGAAACGGCGCCGTCGGACCTGAAGTCCTTCTCCCTGACGTGCAAGTGGTTCTACGCGGCGGAGGCGAGGCACCGGCGCGCGCTGCGGCCGCTGCGGGCGGAGCACCTGCCCGCGATCGTCGCCCGGTACCCGTGCGTGCGCGAGCTGGATCTCTCGCTGTGCCCGCGCGTGGGCGACGGGGCGCTGTCGCTGGTGGCGGGGGCGTACGGGGGGACGCTCCGGCGGCTGGACCTGTCGCGGTCGCGGTGGTTCACGGCGAGCGGGCTGCTGAGCGTGGGCGTGGCGTGCGGGAGCCTGGTGGAGCTGGACCTGTCGAACGCGACGGAGCTGAGGGACGCCGGGGCGGCGGTGGTGGCGCGTGCGCGGAACCTGCGGAAGCTGTGGCTGGCGCGGTGCAAGCTGGTGACGGACATGGGGATTGGGTGCATCGCGGTGGGGTGCAGGGAGCTGAGGCTGATCTGCTTGAAGTGGTGTGTGGGGATTGGGGATTTGGGCGTGGATTTGGTGGCGATTAAGTGTAAGGAGCTCAGATCATTGGATCTCTCTTATTTGCCTATCACAGAGAAATGTCTGCCGTCAATCTTCAAATTGCAACATCTTGAAGATTTGGTCCTCGAAGGATGCTTTGGTATTGATGATGACAGCCTCGATGTTGATCTCTTAAAACAAGGGTGCAAGACAGTGAAGAAACTTGATATCTCAGGTTGTCAAAACATAAGTCACATTGGACTATCAAAGCTAACAAGCATTTCTGGAGGTTTAGAGAAACTCATTTTAGCAGACGGTTCTCCTGTCACTCGTGCTCTTGCTGATGGTTTGAATAAACTTTCCATGTTGCAATCAATTGTATTAGATGGCTGCCCTGTTACTTCTGATGGATTAATGGCAGTTGGAAATTTGTGCATTTCACTAAGGGAGCTGAGTCTAAGCAAATGTTTGGGAGTGACAGATGAAGCTCTCTCATTCCTTGTGTCAAAACACAAAGATTTAAAGAAGCTTGACATCACATGCTGTCGCAAGATAACTGATGTTTCCATTGCCAGCATTGCAAATTCATGCACAGGTCTTACTTCTCTCAAAATGGAGTCATGTACACTAGTTTCACAGGAAGCATTTGTCTTGATTGGACAGAAATGCTATTATCTTGAGGAGCTGGACCTAACAGATAATGAAATTGATGATGAAGGTCTTATGTCCATTTCTTCTTGTTCTAGGCTCTCCAGTTTGAAAATAGGAATCTGCCTGAACATAACCGACAGAGGACTTGCCTATGTTGGCATGCATTGCTCAAAATTAAAGGAGCTGGATCTATACAGGTCTACAGGAGTAACTGATTTGGGCATTTCAGCGATTGCTCGCGGTTGCCCTGGCCTTGAGATGATAAATACATCCTATTGTACTAGCATCACCGACAGGGCACTAATCTCCTTGTCAAAATGTTCAAATTTGAAGACACTTGAAATTCGTGGATGTCTTCTTGTTACATCTATAGGTCTGGCAGCTATTGCAATGAATTGCAGACAACTAAGCCGTCTAGACATAAAAAAGTGTTACAACATTGATGATAGTGGGATGATTCCACTAGCTCATTTCTCCCAAAATCTAAGACAGATAAATTTGTCATATAGCTCAGTTACAGATGTGGGGCTTCTGTCACTTGCTAGTATCAGTTGCCTTCAAAGCTTTACCGTGCTTCACCTGCAAGGCTTGGTTCCAGGAGGACTGGCTGCAGCCTTATTAGCTTGTGGAGGGCTAACAAAAGTGAAGCTTCATCTTTCACTAAGATCTCTGTTACCTGAGCTACTTATCAAACATGTAGAAGCACGTGGCTGTGTGTTTGAATGGAGAGATAAAGAGTTTCAGGCTGAATTGGACCCGAAGTGTTGGAAATTACAGTTAGAAGATGTGATGCAATAG 2013 0.4923 MKKQKRSEVPTQNDNPFELLTEELIFTVLDFLETAPSDLKSFSLTCKWFYAAEARHRRALRPLRAEHLPAIVARYPCVRELDLSLCPRVGDGALSLVAGAYGGTLRRLDLSRSRWFTASGLLSVGVACGSLVELDLSNATELRDAGAAVVARARNLRKLWLARCKLVTDMGIGCIAVGCRELRLICLKWCVGIGDLGVDLVAIKCKELRSLDLSYLPITEKCLPSIFKLQHLEDLVLEGCFGIDDDSLDVDLLKQGCKTVKKLDISGCQNISHIGLSKLTSISGGLEKLILADGSPVTRALADGLNKLSMLQSIVLDGCPVTSDGLMAVGNLCISLRELSLSKCLGVTDEALSFLVSKHKDLKKLDITCCRKITDVSIASIANSCTGLTSLKMESCTLVSQEAFVLIGQKCYYLEELDLTDNEIDDEGLMSISSCSRLSSLKIGICLNITDRGLAYVGMHCSKLKELDLYRSTGVTDLGISAIARGCPGLEMINTSYCTSITDRALISLSKCSNLKTLEIRGCLLVTSIGLAAIAMNCRQLSRLDIKKCYNIDDSGMIPLAHFSQNLRQINLSYSSVTDVGLLSLASISCLQSFTVLHLQGLVPGGLAAALLACGGLTKVKLHLSLRSLLPELLIKHVEARGCVFEWRDKEFQAELDPKCWKLQLEDVMQ 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2454 670 Gene3D Ribonuclease Inhibitor 295 405 IPR032675 -
Ssu4g2454 670 PANTHER F-BOX/LRR-REPEAT PROTEIN 3 2 612 - -
Ssu4g2454 670 Gene3D Ribonuclease Inhibitor 406 656 IPR032675 -
Ssu4g2454 670 Gene3D Ribonuclease Inhibitor 12 283 IPR032675 -
Ssu4g2454 670 SUPERFAMILY F-box domain 7 53 IPR036047 GO:0005515
Ssu4g2454 670 SUPERFAMILY RNI-like 255 504 - -
Ssu4g2454 670 SMART LRR_CC_2 487 512 IPR006553 -
Ssu4g2454 670 SMART LRR_CC_2 153 178 IPR006553 -
Ssu4g2454 670 SMART LRR_CC_2 308 332 IPR006553 -
Ssu4g2454 670 SMART LRR_CC_2 102 127 IPR006553 -
Ssu4g2454 670 SMART LRR_CC_2 461 486 IPR006553 -
Ssu4g2454 670 SMART LRR_CC_2 359 384 IPR006553 -
Ssu4g2454 670 SMART LRR_CC_2 179 204 IPR006553 -
Ssu4g2454 670 SMART LRR_CC_2 205 229 IPR006553 -
Ssu4g2454 670 SMART LRR_CC_2 436 460 IPR006553 -
Ssu4g2454 670 SMART LRR_CC_2 564 588 IPR006553 -
Ssu4g2454 670 SMART LRR_CC_2 385 410 IPR006553 -
Ssu4g2454 670 SMART LRR_CC_2 257 282 IPR006553 -
Ssu4g2454 670 SMART LRR_CC_2 513 537 IPR006553 -
Ssu4g2454 670 SMART LRR_CC_2 411 435 IPR006553 -
Ssu4g2454 670 SMART LRR_CC_2 538 563 IPR006553 -
Ssu4g2454 670 SMART LRR_CC_2 333 358 IPR006553 -
Ssu4g2454 670 PANTHER UNCHARACTERIZED 2 612 - -
Ssu4g2454 670 Pfam Leucine Rich repeat 460 484 IPR001611 GO:0005515
Ssu4g2454 670 Pfam Leucine Rich repeat 511 535 IPR001611 GO:0005515
Ssu4g2454 670 Pfam Leucine Rich repeat 564 586 IPR001611 GO:0005515
Ssu4g2454 670 Pfam Leucine Rich repeat 361 382 IPR001611 GO:0005515
Ssu4g2454 670 Pfam Leucine Rich repeat 257 279 IPR001611 GO:0005515
Ssu4g2454 670 Pfam Leucine Rich repeat 413 433 IPR001611 GO:0005515
Ssu4g2454 670 SUPERFAMILY RNI-like 67 320 - -
Ssu4g2454 670 SUPERFAMILY RNI-like 461 622 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2454 Ssu-Chr4 61572032 61576572 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2454 K10268 - gmx:100812083 1139.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g2454 4 61572032 61576572 Ssu4g2454 4 61572032 61576572 ECH