Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2445 ATGCATGACCTCATGCACGATCTAGCAGCATCCCTTGGTGAAGAATTCTATTTGAGATCAGAAGAATTGGGAAAAGAAACTAAGATTGATGTCAAGACTCGTCATTTGTCGTTTACCAAATTCAGTGATCCAGTCTCGGACGACTTTAAAGCTTTTGGTAGAGTAAAATTTTTGAGAACTTTCTTGCCGATTGGTTTTGAAGTTTCTCCCTTCAACAATGAAAATGCACCATGTATTATAATGTCGAAGCTTAAGTACTTGAGAGTTTTATCATTCCATGACTTTGAAAGTCTAGATGTTTTGCCTGATTCAATTGGTAAACTGATCCATTTGCGTTATTTAAATCTCTCTGGTGCAAGTATAGAAACATTGCCGGAATCATTGTGTAATTTGTACAATCTACAAACTTTGAAGTTATCTTATTGCTTTGAGCTGACTAAGTTGCCCAGTGGCCTGCAAAATCTTGTAAACTTGCGTCATCTTGATATAGGCAGAACTTCTATAAAAGAGATGCCTAAAGGAATGGGAAAATTAAACCATTTACAGcatttgaatttctttattgTGGGCAAGCATGAGGAGAATAAGATCAAAGAATTGGGAGGACTTTCAAATCTTCATGGTTCATTTTCCATTAAGAATTTGGAAAATGTTAGCAAAAGTGATGAAGCATTGGAGGCTAGAATAATAGATAAGAAGCACATTAATAGTTTATCCTTGGAATGGTCTACACGTAACAATAATGGCACAGATTTCCAAATTGAATTAGATGTACTCTGCAAGTTACAGCCTCACCAAGACCTGGAATCACTATCAATAAGTGGTTATAAAGGAACCAGATTTCCAGATTGGGTGGGAAATTTTTCCTACCGTAATGTAACTCATCTAAGCTTACATAATTGTAGCAACTGTTGTATGCTTCCTTCACTTGGGCAACTACAATCTCTCAAGACACTCACTATTTCAAACTTGAATTCGGTGAAGACTATTGATGCAGGTTTTTACAAGAATGAAGATTGTTCTTCCATGACACCCTTTCCCTCCCTTGAATCTCTAGACATTTATCACATGCCTTGTTGGGAGGTGTGGAATTCCTTTGATTCTGAAGCTTTTCCTGTACTTAAGGATCTTAAAATACATGACTGCCCCAAACTAAAGGGAGATTTGCCAAATCACCTTCCTGCTCTGAAAACACTTACAATTCAAAATTGTGAGCTTCTTGTCTCTTCTCTCCCGAGTGCTCCCGCCCTTCGAAGAGTACGGATATGTAAAAGCAATAAAGTAGCGCTGCATGTGTTTCCTCTTTTGGTGGAAGATATAGAAATAGAAGGAAGCCCAATGGTGGAGTCTATGATCGAGGTCATCAATAACATCCAACCAACTTGCCTCCAATCTTTAACATTATCGGATTGTTCGTCAGCCATATTTTTCTCGGATGGTCGTCTACCTGGATCGCTGACGACTCTGACAATCCACGGTCTTAAACATCTGGAATTTCCGACACAACACAAACACGAGTTACTGAAATCACTGTCTATTAACGATAGTTGTGATTCGCTCACGTCTCTTCCACTGGGTACCCTTCCAAATCTCAAAAATCTCGAAATCAGACTCTGTGAAAATATGGAATCTCCTTTGGGTTCGGGATCAGAGTCATTTAAGAGTCTGAGTTCTTTTGAGATTTGCATGTGCCCCAACTTTGTATCATTCCCGAGAGAAGGATTGCCTGCGCCCAATTTGACTCGTTTCATAGTTTCCGATTGTGCCAAGTTGAGGTCGTTGCCTGATGAGATGAGTACTCTTCTCCCAAAGTTAGAATATCTTAACATATCCAACTGCCCGGAAATTGAGTCGTTTCCTGGAGGGGGTATGCCACCTAACTTGAGAACAGTTTGGATCATCAATTGTGAGAAACTACTGAGCGGCCCAGCATTGCCATCCATGGACATGCTCACCAATCTCCATGTCTGGGGTCCATGTGATGGCATTAAATCCTTCCCAAAGGACGGTTTGCTGCCTCCCTCCCTTACGTATCTGGATCTATATAACTTCTCAAGTCTGGAGACGTTGGACTGCAAGGGGCTTCTCCATCTCACATCCCTGCaacaattagaattttttatctGTCCAAAGCTGGAGAATATGGTGGGAGAAAGGCTGCCTGTCtgtctaataaaattaatcatacgGGAATGTCCTTTGCTGGAAAAACGATGCCGCACAAAGCACCGTCAAATTTGGCCTAAAATTTCCCATATCCGTGGCATTAATGTTGGCGGATGGAGACTGAATCTTATGCATATGGAATATGTCCATCCTGCTTCAATTGGGAAATACAGTAATGGCTTTGTTCAAATTAACGGGATGATCCCAGCCTACCTGGTTACAGCTCCTATTGTGCATGTCACCCAGgcttaa 2418 0.3999 MHDLMHDLAASLGEEFYLRSEELGKETKIDVKTRHLSFTKFSDPVSDDFKAFGRVKFLRTFLPIGFEVSPFNNENAPCIIMSKLKYLRVLSFHDFESLDVLPDSIGKLIHLRYLNLSGASIETLPESLCNLYNLQTLKLSYCFELTKLPSGLQNLVNLRHLDIGRTSIKEMPKGMGKLNHLQHLNFFIVGKHEENKIKELGGLSNLHGSFSIKNLENVSKSDEALEARIIDKKHINSLSLEWSTRNNNGTDFQIELDVLCKLQPHQDLESLSISGYKGTRFPDWVGNFSYRNVTHLSLHNCSNCCMLPSLGQLQSLKTLTISNLNSVKTIDAGFYKNEDCSSMTPFPSLESLDIYHMPCWEVWNSFDSEAFPVLKDLKIHDCPKLKGDLPNHLPALKTLTIQNCELLVSSLPSAPALRRVRICKSNKVALHVFPLLVEDIEIEGSPMVESMIEVINNIQPTCLQSLTLSDCSSAIFFSDGRLPGSLTTLTIHGLKHLEFPTQHKHELLKSLSINDSCDSLTSLPLGTLPNLKNLEIRLCENMESPLGSGSESFKSLSSFEICMCPNFVSFPREGLPAPNLTRFIVSDCAKLRSLPDEMSTLLPKLEYLNISNCPEIESFPGGGMPPNLRTVWIINCEKLLSGPALPSMDMLTNLHVWGPCDGIKSFPKDGLLPPSLTYLDLYNFSSLETLDCKGLLHLTSLQQLEFFICPKLENMVGERLPVCLIKLIIRECPLLEKRCRTKHRQIWPKISHIRGINVGGWRLNLMHMEYVHPASIGKYSNGFVQINGMIPAYLVTAPIVHVTQA 805
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2445 805 PANTHER OS05G0414200 PROTEIN 507 714 - -
Ssu4g2445 805 PANTHER DISEASE RESISTANCE PROTEIN RP 507 714 IPR044974 GO:0006952
Ssu4g2445 805 SMART LRR_typ_2 108 131 IPR003591 -
Ssu4g2445 805 SMART LRR_typ_2 155 178 IPR003591 -
Ssu4g2445 805 SUPERFAMILY L domain-like 1 408 - -
Ssu4g2445 805 Gene3D Ribonuclease Inhibitor 623 746 IPR032675 -
Ssu4g2445 805 Gene3D Ribonuclease Inhibitor 461 622 IPR032675 -
Ssu4g2445 805 Gene3D Ribonuclease Inhibitor 67 459 IPR032675 -
Ssu4g2445 805 SUPERFAMILY L domain-like 452 751 - -
Ssu4g2445 805 PANTHER OS05G0414200 PROTEIN 1 497 - -
Ssu4g2445 805 PANTHER DISEASE RESISTANCE PROTEIN RP 1 497 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2445 Ssu-Chr4 61426194 61434813 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2445 83 206 Receptor kinase-like Gene Family AT4G13920 36.641 8.60e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2445 - - gmx:100813244 1137.48