Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2376 ATGATGGCATGCCAAGAGTGGCCAGAGCCGGTGATTCGAGTCCAAGCCTTGGCTGAAAGTGGCTTAACCACAATCCCTGAACGTTTCGTAAAGCCTGAGTTCCAAAGAGCCCCCAGCACTTGTGCTCCAAACCTAGCCAATTCTTCTCACAATGATGAGAACATTAACATCCCTGTGATTGACATGAAACACATCTATGGTGGGGACGAGAGGCTGAGGGAGGAGGCGCTCCGACACGTGTCTGAGGCGTGTAGGGAATGGGGTTTCTTCCAGGTGCTGAACCATGGGGTGAGCCATGAGTTGATGAAGCAAGCGAGGGAGGTGTGGCGTGAGTTCTTTCACCAGCCACTTGAGGTGAAAGAGGAGTATGCTAATTCACCCCTCACATATGAAGGGTATGGAAGCAGGTTGGGAGTGAAAAAGGGGGCCATTTTGGACTGGAGTGACTACTTCTTTCTCCATTACATGCCTTGTTCCCTTAGGGACCAAACCAAGTGGCCAGCCCTCCCAACATCCTTAAGGAATATCATCGCTGAATATGGTGAGGAAATTGTTAAACTAGGAGGAAAGATACTTGAGATTATGTCAATCAATCTTGGTCTGAGAGAGGATTTCCTCCTAAATGCATTTGGTGGGGCAAATGATCTTGGTGCTTGCTTAAGGGTGAATTTCTATCCGAAGTGCCCACAACCTGACCTCACTCTTGGCCTGTCCCCTCACTCAGACCCTGGTGGTATGACCATTCTTCTCCCTGATGATAATGTGTCTGGACTTCAAGTACGCAGAGGAGAAGATTGGATCACTGTTAAGCCTGTCCCAAATGCTTTCATCATTAACATGGGTGACCAAATTCAGGTGTTGAGCAATGCAATTTACAAGAGTATAGAGCACAGGGTGATCGTGAACTCAAACAAAGATCGAGTTTCATTGGCCTTCTTTTATAACCCCAGGAGCGATATACCGATTCAACCTGCCAAGCAGCTTGTGACTAAGGATAGGCCAGCACTCTACCCACCAATGACATTTGATGAGTATAGACTTTACATTAGGACAAAAGGACCCAGTGGAAAAGCTCAAGTTGAATCTTTGACTTCCAAATGTGATTCCAATTGA 1113 0.4699 MMACQEWPEPVIRVQALAESGLTTIPERFVKPEFQRAPSTCAPNLANSSHNDENINIPVIDMKHIYGGDERLREEALRHVSEACREWGFFQVLNHGVSHELMKQAREVWREFFHQPLEVKEEYANSPLTYEGYGSRLGVKKGAILDWSDYFFLHYMPCSLRDQTKWPALPTSLRNIIAEYGEEIVKLGGKILEIMSINLGLREDFLLNAFGGANDLGACLRVNFYPKCPQPDLTLGLSPHSDPGGMTILLPDDNVSGLQVRRGEDWITVKPVPNAFIINMGDQIQVLSNAIYKSIEHRVIVNSNKDRVSLAFFYNPRSDIPIQPAKQLVTKDRPALYPPMTFDEYRLYIRTKGPSGKAQVESLTSKCDSN 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2376 370 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 215 316 IPR005123 -
Ssu4g2376 370 PANTHER LEUCOANTHOCYANIDIN DIOXYGENASE-LIKE 3 361 - -
Ssu4g2376 370 SUPERFAMILY Clavaminate synthase-like 10 351 - -
Ssu4g2376 370 Pfam non-haem dioxygenase in morphine synthesis N-terminal 57 167 IPR026992 -
Ssu4g2376 370 PRINTS Isopenicillin N synthase signature 276 302 - -
Ssu4g2376 370 PRINTS Isopenicillin N synthase signature 80 97 - -
Ssu4g2376 370 Pfam 2OG-Fe(II) oxygenase superfamily 218 316 IPR044861 -
Ssu4g2376 370 PANTHER OXOGLUTARATE/IRON-DEPENDENT DIOXYGENASE 3 361 - -
Ssu4g2376 370 Gene3D - 9 351 IPR027443 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2376 Ssu-Chr4 58249770 58253460 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2376 14 363 Glycosyltransferase AT5G59530 31.092 4.08e-51 172
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2376 - - gmx:100809662 660.603