Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2372 ATGGTCGGAAAAACCAAGTCCATGGCGGCGACTTCGCGCGAAAAGCTCGCGACTCTCGTGAACGCTGCCAAGCTGGCCATCGACATCCCGTCCAAGCTCGAATCGCTGCGCCAACTGCGCCACGAACTTCCCCTAGAAGACCCTGTCCTCCTCACCGAGTTCCTCCCCTCGCTCTTCCTCTTCCACTCCGATCGCTTCGGCCCCGTGCGCAAATTCGTCACCGAgATGCTTGGGGAGATTGGATTGGAGAACACGGAGTTCTTGTCCGACATTGTGCCTGTGCTGATTGATGTGTTGGACGACGATACGCCGGCGGTTGTGCGGCAAGCTCTACTGTGCGGAATTGACTTGTTTCGCGGCACGCTTGAGAAGATTGCGGTTCAGggtCTATATTCTAGTGATTTAGATGATTCACTTGAATCTGCATGGGCATGGATGGTTAAATTCAAAGACAAAGTATACTCAATAGCTTTTCAACATGGAAGTGGTGGCACGAAGCTGCTGGCACTGAAGTTTGTTGAGGCAGTTATTCGTCTTTACACTCCTGATCCTAATGGTTCCTCAGAGCCCACTTCTCATCAAGGAAGGCCTGTGGAATTTAATATATCATGGCTCAGGCGGGGTCATCCTGTACTTAAACTTGGAGATTTGTCAATTGAAGCCAGCCATCGTTTGGGTCTCTTGCTTGATCAACTCAGATTTCCAACTGTGAAGTCCCTTAGTAACTCAGTGATCATTGTGCTGATTAAAAGTCTTTCAGCCATTGCAATTGATAGGCCTGCATTCTATGGCCGCATCTTGCCAGTTTTGCTCAGTTTGGAACCTTCCAGCTCCGTTGTTAATGGGGTCTGTGTATCAGCTGCACATCTTGCTTTGAAGAATGCCTTTCTTACTTGCTCGAAATGTACACATCCAAGTGCTGCTCCGtGGAGAGATCGTTTGGCAGGTGCATTGAAGGAAATGCAGTCAGAAGGAAAGGCAGATCTGGTGTTCCACCTAATCTCTGCAAGTAATGGAAgcataaagagagagaaggatgATCAACCTGTTATCCAGgaAGGGGAACCTGCAGTAAATTCTTTTGATTCAGTGCACAGTAATTTAGCAAGAAAACGATCAGGATCACAAATTGGAGGTGATTTAGCTGAAGATGATGTTCCTGGAAAACGTGTCAGGACCACAATTGTTGCTTTGGAAGAACCTAAGAAACAGTTAGATGAATGTATCACTGACAACTCTCAGGATGAGAGTCCTTCAACTATACCAACATCTTCAAAAGAAGATGTGGATAATGGGCCTGTACGGCAACTTGTTGCCACTTTTGGTGCTTTGATTGCTCAAGGTGAAAAAGCTATTGGACATTTGGAAATTCTCATCTCAAGTATTTCTGCTGACTTGCTAGCTGAGGTGGTGATGGCAAATATGCGAAATCTACCTCCAAATTACCCTAATGCTGAAGAAAATGATGAACAGCTGCAAGACATCAGTATGATTGGTTCTGATGACAAGGCTAAATATCCACCATCATTTGTAGCTGGTGTTATGTCACTTTCTAGTACTTTTCCGCCAATAGCTTCCCTTCTTGATGCTCATCAATCAGTGTTCAATGAGGTAAAGTCACAAGGGGAGGAAGAAATTTCTGCAACTGCTGCAAATAGTGGTGCTGTGCATTCTGGCATGAACCTTGTATCTGAAAATATACCATCGCCTACTGATTTTCCATCTTCTGATGCTAGTATACCTGGAGTAGAGAATGGCTGCTCAACTATGCCTCCTGACATCCATGACGTTGGAAACTCAGAGAGTGGAATCCCTGGCCTGGATTCTTTTGGTCGTAATGATGCCTTGTCACAAACTTTGGCTCCTTCCTTATTGGCTTCCACTGAAATACGCCTAGAAGATGGCAGTCAAGAGCAAGATACAAGTTTGGATCAGAGGTCACCTCTGAACTTAGCTCCATCAATATCAACAGATAGATCTGAGGAGCTGAGCCCAAAAGCGCCTGTTACAGATGTCAATAGCTTGGTGTCCTCAACAGCTACTTCAGTTGTGTTGCCTCACCGTTTAGTCTTGCCAAAGATGATTGCTCCTGTTGTTGAACTTGCAGATGAACAAAAGGATCATTTGCAAAAGTCATGTTTTATGCGTATTATTGATGCATATAAGCAAATAGCTGTAGCTGGGGGTTCCAAAGTCCGTTTTTCGATACTCGCTTATTTAGGAGTTGAGTTTCCCTTGGAATTAGACCCATGGAAACTTTTACAGAAGCATATTTTGATTGATTACTCTAGTCATGAGGGACACGAGTTGACATTGCTTGTCCTCTACAGATTATTTGGTGAGGCGGAAGAGGAGCCTGACTTCTTTTCTTCCACAACTGCAGCTTCTGTATATGAAAAATTCCTCCTTACAGTgGCAGAAGCACTTAGAGATTCCTTTCCACCTTCAGATAAATCATTAAGTAAATTGCTTGGTGAATCTCCTTATTTACCAAAATCAGTtctgaaaattttagaaaacatgtgTTCTCCTGAAAATGGGGATAAGGGTGAAAAGGAGTTACACTCACTGAATGCAGATAGAGTTACTCAAGGTCTAAGTGCTGTATGGAGTTTGATTCTTCTAAGGCCTCCCATTCGAGATACTTGCTTACAAATTGCTCTACAGAGTGCAGTGCATCACTTGGAAGAAGTGCGTATGAAGGCAATACGTCTGGTGGCAAATAAGCTTTATCCTTTGTCATCCATTTCTCGGCAAATAGAAGATTTTGCAAAGGAAATGCTTTTATCAGCGATGAGTGGTGATGCATCTGAAGCTACTGATGTTGAAGGGTCCATTGCTGATTCACAAAAGGGACCTGATATTCAGAAGGTTCCAAACGAACAATCATCATTGAGTGGCAGCATTAAAGATGTCTCCTCAGATAATCGTCAATCATGCACATCTGAGAGTGTCTCACCAGATTGTGTTTCCGAGGCTCAGAGGTGCATGTCATTGTATTTTGCTTTGTGCACAAAGAAACATTCTCTCTTTCGCCAAATATTTGTCATCTATAGAAGCACATCAAAGGCAGTGAAGCAGGCAGTACATCGCCAAATTCCAATACTAGTACGTACTATGGGCACATCTTCAGATCTCCTTGAAATTATTTCAGATCCCCCAAATGGAAGCGAGAATCTTTTAATGCAGGTATTGCATACACTTACAGATGGTACGATCCCTTCTAAGGATTTAATATGTACTGTGAAAAGGTTGCATGATTCAAAACTCAAGGATGCAGAGGTTCTCATTCCGATATTACCATTCCTATCGAATGATGAGGTAATGCCGATTTTTCCTCACATTGTGAATCTTCCTTTGGAGAAGTTCCAAGCAGCACTTGGTCGCATATTGCAGGGATCATCACAATCTGGTCCGGTGCTTACTCCGGCTGAAGTTTTAATTGCAATTCATGGAATTGATCCTGAAAGGGACAGGATTCCCTTGAAAAAGGTCACAGATGCATGCAATGCTTGCTTTGAGCAGCGGCAAACTTTTACTCAAGAAGTTCTTGCCAGAGTTTTGAATCAGTTGGTTGAGCAGATTCCTCCTCCTTTACTATTCATGCGTACAGTATTACAAGCAATTGGTGCTTTTCCAACACTGGTGGACTTTATCATGGGGATTCTTTCTCGCCTTGTGACGAAGCAGATATGGAAATACCCAAAGTTGTGGGTGGGATTCTTGAAGTGTGTGCAGTTGACAAAACCACAGTCATTTGGCATTTTGCTTCAGCTGCCTCCAGCACAATTGGAAAATGCATTAAATAGAATTGCAGCCCTGAAGGCACCATTGATTGCTCATGCTAGCCAGCCAGATATACAATCTAAACTTCCAAGGGCTATGCTGGTTGTTCTGGGAATTGCTTCGGATTCTCAGGTTTCAAGTCAAGCACAAACTACTCAGACACAGACTACTCAGACACAAACTAGTCAGACACAGACTGGTGAGACAAGCAACTCAGACAAGGACACAGCGACAGAAAAATCTAAAGAATCATCTACAGCGAGCTGA 4053 0.4315 MVGKTKSMAATSREKLATLVNAAKLAIDIPSKLESLRQLRHELPLEDPVLLTEFLPSLFLFHSDRFGPVRKFVTEMLGEIGLENTEFLSDIVPVLIDVLDDDTPAVVRQALLCGIDLFRGTLEKIAVQGLYSSDLDDSLESAWAWMVKFKDKVYSIAFQHGSGGTKLLALKFVEAVIRLYTPDPNGSSEPTSHQGRPVEFNISWLRRGHPVLKLGDLSIEASHRLGLLLDQLRFPTVKSLSNSVIIVLIKSLSAIAIDRPAFYGRILPVLLSLEPSSSVVNGVCVSAAHLALKNAFLTCSKCTHPSAAPWRDRLAGALKEMQSEGKADLVFHLISASNGSIKREKDDQPVIQEGEPAVNSFDSVHSNLARKRSGSQIGGDLAEDDVPGKRVRTTIVALEEPKKQLDECITDNSQDESPSTIPTSSKEDVDNGPVRQLVATFGALIAQGEKAIGHLEILISSISADLLAEVVMANMRNLPPNYPNAEENDEQLQDISMIGSDDKAKYPPSFVAGVMSLSSTFPPIASLLDAHQSVFNEVKSQGEEEISATAANSGAVHSGMNLVSENIPSPTDFPSSDASIPGVENGCSTMPPDIHDVGNSESGIPGLDSFGRNDALSQTLAPSLLASTEIRLEDGSQEQDTSLDQRSPLNLAPSISTDRSEELSPKAPVTDVNSLVSSTATSVVLPHRLVLPKMIAPVVELADEQKDHLQKSCFMRIIDAYKQIAVAGGSKVRFSILAYLGVEFPLELDPWKLLQKHILIDYSSHEGHELTLLVLYRLFGEAEEEPDFFSSTTAASVYEKFLLTVAEALRDSFPPSDKSLSKLLGESPYLPKSVLKILENMCSPENGDKGEKELHSLNADRVTQGLSAVWSLILLRPPIRDTCLQIALQSAVHHLEEVRMKAIRLVANKLYPLSSISRQIEDFAKEMLLSAMSGDASEATDVEGSIADSQKGPDIQKVPNEQSSLSGSIKDVSSDNRQSCTSESVSPDCVSEAQRCMSLYFALCTKKHSLFRQIFVIYRSTSKAVKQAVHRQIPILVRTMGTSSDLLEIISDPPNGSENLLMQVLHTLTDGTIPSKDLICTVKRLHDSKLKDAEVLIPILPFLSNDEVMPIFPHIVNLPLEKFQAALGRILQGSSQSGPVLTPAEVLIAIHGIDPERDRIPLKKVTDACNACFEQRQTFTQEVLARVLNQLVEQIPPPLLFMRTVLQAIGAFPTLVDFIMGILSRLVTKQIWKYPKLWVGFLKCVQLTKPQSFGILLQLPPAQLENALNRIAALKAPLIAHASQPDIQSKLPRAMLVVLGIASDSQVSSQAQTTQTQTTQTQTSQTQTGETSNSDKDTATEKSKESSTAS 1350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2372 1350 MobiDBLite consensus disorder prediction 641 663 - -
Ssu4g2372 1350 Pfam Symplekin/PTA1 N-terminal 104 321 IPR032460 -
Ssu4g2372 1350 Pfam Symplekin tight junction protein C terminal 1092 1270 IPR022075 -
Ssu4g2372 1350 SUPERFAMILY ARM repeat 33 1226 IPR016024 -
Ssu4g2372 1350 MobiDBLite consensus disorder prediction 411 430 - -
Ssu4g2372 1350 MobiDBLite consensus disorder prediction 634 671 - -
Ssu4g2372 1350 Gene3D - 2 345 IPR011989 -
Ssu4g2372 1350 MobiDBLite consensus disorder prediction 406 430 - -
Ssu4g2372 1350 MobiDBLite consensus disorder prediction 955 984 - -
Ssu4g2372 1350 MobiDBLite consensus disorder prediction 569 583 - -
Ssu4g2372 1350 MobiDBLite consensus disorder prediction 569 610 - -
Ssu4g2372 1350 MobiDBLite consensus disorder prediction 940 984 - -
Ssu4g2372 1350 MobiDBLite consensus disorder prediction 1309 1350 - -
Ssu4g2372 1350 PANTHER SYMPLEKIN/PTA1-RELATED 1 1243 - -
Ssu4g2372 1350 PANTHER PHOSPHATIDYLINOSITOL 3-AND 4-KINASE FAMILY PROTEIN-RELATED 1 1243 - -
Ssu4g2372 1350 MobiDBLite consensus disorder prediction 1309 1334 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2372 Ssu-Chr4 58066304 58082079 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2372 K06100 - gmx:100779360 2337.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g2372 4 58066304 58082079 Ssu4g2372 4 58066304 58082079 ECH