Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2361 ATGGCCGTCGTTGGCGTCCTCGCGTTGCAAGGATCTTTCAACGAGCACATAGCTGCTCTTAGAAGGTTAGGGGTGAAAGGCGTGGAAATTCGAAAGCCAGAGCAGCTTCTCACCGTTAGTTCCCTCATCATCCCTGGTGGAGAAAGCACCACCATGGCTAAGCTCGCCGAGTACCACAACTTGTTTCCTGCCTTGCGAGAGTTTGTACAAATGGGAAAGCCTGTTTGGGGAACCTGTGCAGGGCTTATATTCTTGGCAAATAGAGCTACAGGACAGAAGACTGGTGGACAAGATCTGGTCGGTGGACTTGATTGTACAGTGCATAGAAATTTCTTTGGCAGCCAGATTCAAAGCTTTGAGGCAGAGCTTTCAGTGCCAGAGCTCGCCTCCAAAGAAGGTGGTCCTGAAACATTTCGTGGAGGCCATGAAGTTCAAGTGCTGGCTGATTATCCTGTACCTTCTAGCAGATTGTTGAGTTCTGATTCCTTTATTGAAGACAAAACGGAGAATGCTGAGGAAGAAGGTAAAGTTATAGTTGCTGTGAGACAAGGGAACATACTAGGGACTGCTTTCCATCCTGAATTGACAGCTGATACTCGATGGCATagttatttcttaaaaatggcAAATGAGATTGGAGAAGAGGTCTCCTCAAGTAGCATTGTTCCTGCACAGGTCGGCACAAGTTACTACCAACAGCCACGGAATGACCTTCCCGTCTTTCAATAG 729 0.4664 MAVVGVLALQGSFNEHIAALRRLGVKGVEIRKPEQLLTVSSLIIPGGESTTMAKLAEYHNLFPALREFVQMGKPVWGTCAGLIFLANRATGQKTGGQDLVGGLDCTVHRNFFGSQIQSFEAELSVPELASKEGGPETFRGGHEVQVLADYPVPSSRLLSSDSFIEDKTENAEEEGKVIVAVRQGNILGTAFHPELTADTRWHSYFLKMANEIGEEVSSSSIVPAQVGTSYYQQPRNDLPVFQ 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2361 242 ProSiteProfiles PdxT/SNO family profile. 3 210 IPR002161 GO:0004359|GO:0042819|GO:0042823
Ssu4g2361 242 PANTHER PYRIDOXAL 5'-PHOSPHATE SYNTHASE SUBUNIT SNO 2 215 IPR002161 GO:0004359|GO:0042819|GO:0042823
Ssu4g2361 242 PIRSF Glut_amidoT_SNO 1 213 IPR002161 GO:0004359|GO:0042819|GO:0042823
Ssu4g2361 242 Hamap Pyridoxal 5'-phosphate synthase subunit PdxT [pdxT]. 4 208 IPR002161 GO:0004359|GO:0042819|GO:0042823
Ssu4g2361 242 Pfam SNO glutamine amidotransferase family 6 209 IPR002161 GO:0004359|GO:0042819|GO:0042823
Ssu4g2361 242 PANTHER - 2 215 - -
Ssu4g2361 242 TIGRFAM PLP_synth_Pdx2: pyridoxal 5'-phosphate synthase, glutaminase subunit Pdx2 4 131 IPR002161 GO:0004359|GO:0042819|GO:0042823
Ssu4g2361 242 ProSiteProfiles CobBQ-type GATase domain profile. 1 200 - -
Ssu4g2361 242 ProSitePatterns PdxT/SNO family family signature. 41 51 IPR021196 -
Ssu4g2361 242 CDD GATase1_PB 4 206 IPR002161 GO:0004359|GO:0042819|GO:0042823
Ssu4g2361 242 SUPERFAMILY Class I glutamine amidotransferase-like 3 208 IPR029062 -
Ssu4g2361 242 Gene3D - 1 220 IPR029062 -
Ssu4g2361 242 ProSiteProfiles Glutamine amidotransferase type 1 domain profile. 3 215 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2361 K08681 - gmx:100786227 421.009