Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2348 ATGTTCTGCGAATTCTATGTAGGCCTAATCGTTGAGATGGATTCCCAAAACCATATCAATGTTGACAACACCAGTTGGATGGTTCCTATTCAAGTGATGCTGGGTACTATACGTCACAGAGAAGTTCAGGCATGCAGCATCTCTAAGGTTCCAGACAAAATTCGCAAGCCTAACAAGGGCGCATACATGCCCCAGGTTGTCTCCATCGGACCCTACCACAGGGGATCCAAAACCGATCTCTTGTTGATGGAACAACCTAAGTGGAGTTACATGTTGTTTCTTCTAGAACGATCCCAGTTCCAAGAGGAACAAGAAAACACGGAGGAAGAAATCGGAAACGCACCAAGTAAGCTGAAAAATTGCGGCGAAATCATTCTGGAGTTGGACAACATAGTTCGTGCCAGCTACGGGGGGAACATTCAATCCGAACCGGTCGAGCTAGCCAAAACAGTGCTACTAGATGGCTTTTTCTTGTTAGAGTTTCTTCTCAGGCTTCGCAAGTACGTGGAAGCCTTGAGCGAAAAAGttggtaatggtggtggcggcgatgATGAAGACTCCATATTCGAAAGCCAAGACAAACTCTTGTCCGTTTTGAGTGATTTGTTGCTTCTTGAGAACCAGGTACCCTTCATTGTTCTCAAGAAGTTGTATAGGAAACTTTTCCCCATTGATGATGTTCCCATTGAGGAAGATCACCGTGTTGCTAATCTTGCATTGGAAGCTCTTGGGTACCCTTTGGTTATTCCGACCTCTGGTGTGTCTCACCTTCTTCACCTTGTTCATTTGTCCATCGTAAACCACCACGAGGGTAGACACGAAACGAGGCACGCGCGTCAAGAGCTGAAGCGCTGTGCTACGAGGCTTCGAGCTGGTGGAATAGCAATAAGGGTAAGGCCGGCAAATAGAAGCAATGTTGGTTATGCTATTGCTTGTGATAGCTTTGACTTTGGGATAGATTTCAACAATGGGGTGTTGGAAATTCCTCAGCTGCGTATCAAGGAATCAACGGAAGTCAAATGGAGGAACTTGATTGCGTGGGAGCAGAGCAGAATTGGGAACAGACGCAAATTGACTTCGTATGCTTTGTTCTTCCAAGGTTTGATTTGTTGTGGGCATGACATTGAACTGCTTGAGCGTGTGGGAGTCATAGTGAATGAATCCGGGAAAAGCAAGGAAGATTTGCTGAAGCTATTTAGTACGATCTGTGAGGGAGTTGAACACATGGATTCGAGTTATAGCGGAGTTTGTGCGAAGTTGAACAAGGACACGGCGAGAGGAACACAAGCGTTGAAAAAATGGCCTATGGTGACTTGGCATCAGTGCAGACGTATCTTTGCGATTATTGCTTACTATTGGAAAAACTGGTATGGCATTTTGATAAGGGAACATGTCCCTACAATTTGGAAACTCATAGGAGTATTGGCAGCTATCGCGCTGCTAGGCCTCACTATCGCGCAGACATATTACGCGGCACGCAGCAGTATAAATgtccacaaaagaaaaaagaataagcgATTACCATTTGTGAAAAGGCAGAGGAAAACAAAGCCGATCATTATGGTATACCGTATTGTCTCGTGCGAACAGGGATGA 1596 0.4398 MFCEFYVGLIVEMDSQNHINVDNTSWMVPIQVMLGTIRHREVQACSISKVPDKIRKPNKGAYMPQVVSIGPYHRGSKTDLLLMEQPKWSYMLFLLERSQFQEEQENTEEEIGNAPSKLKNCGEIILELDNIVRASYGGNIQSEPVELAKTVLLDGFFLLEFLLRLRKYVEALSEKVGNGGGGDDEDSIFESQDKLLSVLSDLLLLENQVPFIVLKKLYRKLFPIDDVPIEEDHRVANLALEALGYPLVIPTSGVSHLLHLVHLSIVNHHEGRHETRHARQELKRCATRLRAGGIAIRVRPANRSNVGYAIACDSFDFGIDFNNGVLEIPQLRIKESTEVKWRNLIAWEQSRIGNRRKLTSYALFFQGLICCGHDIELLERVGVIVNESGKSKEDLLKLFSTICEGVEHMDSSYSGVCAKLNKDTARGTQALKKWPMVTWHQCRRIFAIIAYYWKNWYGILIREHVPTIWKLIGVLAAIALLGLTIAQTYYAARSSINVHKRKKNKRLPFVKRQRKTKPIIMVYRIVSCEQG 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2348 531 PANTHER DUF247 DOMAIN PROTEIN 25 494 - -
Ssu4g2348 531 PANTHER PROTEIN, PUTATIVE (DUF247)-RELATED-RELATED 25 494 IPR004158 -
Ssu4g2348 531 Pfam Plant protein of unknown function 47 481 IPR004158 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2348 Ssu-Chr4 57141539 57143891 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2348 - - ccaj:109810124 650.973