Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2345 ATGGAGATggagaataagagaaaagaCACAAGATCTTTCTGGTCCACTTGCTACAAGAATTGGAAATCAAGAAAGTCACTGGGAGAAGACAATTTAGATTCCTCAAATTCAAGAGCAATGGAAAAGAAGCCTGGATGGAAGGCCATTTCTTACATCTTAGgaaatcaaataattgagaGGATTGCAACAGTCGGCATGATGGCAAATTTCATGGTGTATTTGTTGCAAGTCTTTAACTTGGGTCAGGTTGCTGCTACAAATGTTATTGGCATATGGACTGGAGTGAGCAATTTCATACCAATTATTGGTGCCTGTGTTGCTGATGCCTATCTAGGAAAATTCAGAACCATTGCTATTTCATCATTTGGAACACTTGTGGGAATGGTGATACTAACACTAACAGCCTGGGTGCCACAACTTCATCCTCCAAGTTGCACTTCTCCCCAGCAATGTGTTCCCTCAACAAGTACTCAGCTTGGCATCTTAATTTTTGGCTTGTGCTGGCTGGCTGTGGGCACAGGTGTTGCCGCTTATAAGAAGCATCGCCTCCAAATTCCAGTAAGAGAAGAGGTAGGTGTTTACTATGATCCACCACTAGATGACAAAGCACCAATGAAGATGCctttaaccaaacaactcaGGTGTTTAAACAAAGCTGCCCTGATACGAGACAATGAACTTAATGCAGAAGGTTGTGTCAAAAATCCATGGAGGCTTTGCAGCATTCTTCAAGTTGAAGAAGTAAAATGTTTGATTAAAATGCTTCCAATCTGGGCTTCTGGTATCCTTTGCTTGATTCCCTTAGTACAACAAGGCACCTTCCCTGTCTCCCAGGCCTTGAAAATGGACCGTCACCTTGGGCCACACTTTGAACTTCCAGCTGCATCATACAATGTGGTGTCCTTAATCACCATTGGCATATTTCTGCCATGCTTTGACCTCTTTCTACAGCCAGCTCTGGCAAAAGTGACCAAACAAGAGGAAGGGCTCACAAGCCTTCAGAAGATAGTGATTGGTGACATATGCTCAATTCTCACAATGGTAAGTGCTGGCTTGGTGGAGTGGCGAAGAAGGGGTGTGGCTATCTCACACGGTGCACCTGATGGGATTGCTCCTATGTCTGCCATGTGGCTGGCACCCCAATATGTGCTATTAGGATTGTGTGAGATGTTCACCCTTATTGGACACATTCAGTTCTACAGTAGTGAATCGCcagagaaaatgaaaagcatAGGCAATTCGTTGCAATATCTTGTGATGGCATTCTCAATTTACGTTGGCACCTTGGTGGTGAACGTCGTGCACCAAGTAACTCAAAAGCATGGTGGAATTGTTTGGCTGAACGATGACATCAACGCTGGTAGATTAGACTACTATTACTTCCTCATTGCAGGATTAGGGGCACTCAATCTTGTCTACATCTTGTTCTGCGTGAAACGCTATCGTTACAAGGTCAATGTCAAAGTAGAAGTGAAGGATACACCTTGA 1488 0.4207 MEMENKRKDTRSFWSTCYKNWKSRKSLGEDNLDSSNSRAMEKKPGWKAISYILGNQIIERIATVGMMANFMVYLLQVFNLGQVAATNVIGIWTGVSNFIPIIGACVADAYLGKFRTIAISSFGTLVGMVILTLTAWVPQLHPPSCTSPQQCVPSTSTQLGILIFGLCWLAVGTGVAAYKKHRLQIPVREEVGVYYDPPLDDKAPMKMPLTKQLRCLNKAALIRDNELNAEGCVKNPWRLCSILQVEEVKCLIKMLPIWASGILCLIPLVQQGTFPVSQALKMDRHLGPHFELPAASYNVVSLITIGIFLPCFDLFLQPALAKVTKQEEGLTSLQKIVIGDICSILTMVSAGLVEWRRRGVAISHGAPDGIAPMSAMWLAPQYVLLGLCEMFTLIGHIQFYSSESPEKMKSIGNSLQYLVMAFSIYVGTLVVNVVHQVTQKHGGIVWLNDDINAGRLDYYYFLIAGLGALNLVYILFCVKRYRYKVNVKVEVKDTP 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2345 495 PANTHER PEPTIDE/NITRATE TRANSPORTER 34 174 - -
Ssu4g2345 495 PANTHER PEPTIDE/NITRATE TRANSPORTER 175 488 - -
Ssu4g2345 495 SUPERFAMILY MFS general substrate transporter 305 483 IPR036259 -
Ssu4g2345 495 Gene3D MFS general substrate transporter like domains 193 490 IPR036259 -
Ssu4g2345 495 Gene3D MFS general substrate transporter like domains 23 177 IPR036259 -
Ssu4g2345 495 SUPERFAMILY MFS general substrate transporter 48 172 IPR036259 -
Ssu4g2345 495 PANTHER OLIGOPEPTIDE TRANSPORTER-RELATED 34 174 IPR000109 GO:0016020|GO:0022857|GO:0055085
Ssu4g2345 495 PANTHER OLIGOPEPTIDE TRANSPORTER-RELATED 175 488 IPR000109 GO:0016020|GO:0022857|GO:0055085
Ssu4g2345 495 Pfam POT family 214 446 IPR000109 GO:0016020|GO:0022857|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2345 Ssu-Chr4 57069369 57072651 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2345 175 490 Organic Solute Cotransporters AT1G69870 48.896 4.67e-107 330
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2345 - - vra:106773369 534.643