Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2330 atgttaaatttgtttcaaagtTTCAAGCTATTATCACTGATTGTTCTATACCCCTCAAACTTCATCATGGCGCTGCAACAAAACAGTTCAGAAATAAACATCTCATCTGTTCTTAAGAAGAAATTGTTGCATCCACTCCGTTATCTATTCGTCAACTCTAAGACCCTACCTTTTATTGGATGTTTGGTTGTAAGCTACACATTCGTGGAAATCGCGGTGGTGTCTATGCTGATGGATTACCTGACAGATTCAATGGAAAAGGAGGATCAGCGGATAGCTGCTGTTGTTACAAATCTGCAAGATGGTttatcttctctcttttttgttattatttctcTAATCTCAGAAGCATATACGGGTTGCTTCACTATGATCACATTTTGCGCTGCAGCTTCCATCGAGGGTTTAATGCTACTATGGACATCTACATCAGCTTCAGCATTTAATGCGGTCTATGCAGCCATATTCTTCCTTGCATTAGGGAAAAGTGGTCAAAACctttcagaaaattttcttgAACATCAGTTGCAAGAAAGAATTAAAGCGAGAAAAGAAAGCGAACAAGAACATGGAagcacacaaaataaaaaagagcaaGACCTCATGGATACAATTCTTACTAATATCTGCTTGTTCGCTCCATTGGTTGTTGGATATATCATAACAGTCTGCGTTGCCTTTGTCGCTCGTGATGCAACGTACGAGGACCTCTTCAGATTTGCGGCACTTCTCATGGGAGAGACGTATCTGTTGTTCCTCTTTGGTTCTGCGTGGTACAGCCGCGAAGAAGTGCCTGTTGAAAGCAATCTACGTAAGATCTTTAGAATCTTCAAAGCAGCTTTTGGGAAACGCGATTCGAAATATCCAACCTCACCTAATTGTTATTACTGGAAGGATTATAAGCAGGACCATTTGTATCGGCGTCGTGAAGAACTAAGGTTATCGCCTCGAGTTCCACATCTATTCAGGTGGTTGGACAAAGCAGCTATAGTTAAAGCAGAAGAATCTAAAGATCCTGAAGTGAGTCCCGAGACGCTAGAAAAGAAAGGGAAGCTTTGCACGGTAAAGGAAGTGAGGGAAGTGAAGAGCCTTGTTCCTATGATTTACCTCTGCTTTGCTTTCTTCGCTTACAGTTTACTCCTGGCCACTGGGAACACTTTCTTTGTCTCACAAGCAAGCAGCTTGACATCAGTTATTACTACCAATGGCAATGATATCTCTATTCTCTTTTTGATCAAGGCCGGCGTGGATGATATGTCACGGTTCATCTGCTTTCTTATCAGTTTTGCATTTCGACACTCTAGAAAATTCAGGGTTATCCATTTTACGTCCTATAAAAAAGCTGCCACGATTATAAGGATTGGTTTTGGCATGGTTTGTGGGGTAGTTTGCAGCCTCATAGCATGGAAAGTGGAGGTTCGTAGATTGTCTTCGCCTTTCATAATAAACCAGGAGGGGGACCTCGTACACCCTGGTACAACAATGGCCTTAGTTccacaatttatattgttaggAGTGACGGAGGGACTTGTTGATGGTGGGTTAGCGAGTTTATTCCATGGCCACGTAGCTAAATCAATGTGGAGTTTCGACGATTCGTTTAGTGAATTGGTGATTGGGACCGGCAAACTCCTTATTGTACCACTTGTCTTAATTTTCAGTGGCTGGTTCAAGGACACTGTCGACACTAGCCATTTGGACAGGTACTATCTGATGTTGACAACAGCGAACGCTACATTCCTTCTCGTTTTTGCATACTACTCCTTCAGATATGCATACAAGGAGGAATGCCCCGAGGATGAAAAAGTTACGATGGAGCAAAGCTTTGAACATGATAATCAGCCTGACTCGGAGGATCCCAATCCGGGAAATAATACTGAAACACAGCCGGTAGACCAAGCTTGGTCTCCACTGGAAGAATGTCTGGAGGATGAAAAAATTAAGGTGGAGGAAACATTGGAATATGTTCATCAACCAAACTCACAGGATTCCTATCTAGAAAGCACATCAGGTGGTGGACCAAGgtataCTGTATAG 2037 0.4055 MLNLFQSFKLLSLIVLYPSNFIMALQQNSSEINISSVLKKKLLHPLRYLFVNSKTLPFIGCLVVSYTFVEIAVVSMLMDYLTDSMEKEDQRIAAVVTNLQDGLSSLFFVIISLISEAYTGCFTMITFCAAASIEGLMLLWTSTSASAFNAVYAAIFFLALGKSGQNLSENFLEHQLQERIKARKESEQEHGSTQNKKEQDLMDTILTNICLFAPLVVGYIITVCVAFVARDATYEDLFRFAALLMGETYLLFLFGSAWYSREEVPVESNLRKIFRIFKAAFGKRDSKYPTSPNCYYWKDYKQDHLYRRREELRLSPRVPHLFRWLDKAAIVKAEESKDPEVSPETLEKKGKLCTVKEVREVKSLVPMIYLCFAFFAYSLLLATGNTFFVSQASSLTSVITTNGNDISILFLIKAGVDDMSRFICFLISFAFRHSRKFRVIHFTSYKKAATIIRIGFGMVCGVVCSLIAWKVEVRRLSSPFIINQEGDLVHPGTTMALVPQFILLGVTEGLVDGGLASLFHGHVAKSMWSFDDSFSELVIGTGKLLIVPLVLIFSGWFKDTVDTSHLDRYYLMLTTANATFLLVFAYYSFRYAYKEECPEDEKVTMEQSFEHDNQPDSEDPNPGNNTETQPVDQAWSPLEECLEDEKIKVEETLEYVHQPNSQDSYLESTSGGGPRYTV 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2330 678 MobiDBLite consensus disorder prediction 602 636 - -
Ssu4g2330 678 PANTHER OLIGOPEPTIDE TRANSPORTER-RELATED 67 587 IPR000109 GO:0016020|GO:0022857|GO:0055085
Ssu4g2330 678 MobiDBLite consensus disorder prediction 657 678 - -
Ssu4g2330 678 MobiDBLite consensus disorder prediction 602 617 - -
Ssu4g2330 678 Pfam POT family 222 543 IPR000109 GO:0016020|GO:0022857|GO:0055085
Ssu4g2330 678 MobiDBLite consensus disorder prediction 618 633 - -
Ssu4g2330 678 PANTHER PROTEIN NRT1/ PTR FAMILY 5.6-LIKE 67 587 - -
Ssu4g2330 678 Gene3D MFS general substrate transporter like domains 31 599 IPR036259 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2330 Ssu-Chr4 56203726 56209178 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2330 58 607 Organic Solute Cotransporters AT2G38100 26.408 1.70e-28 118
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2330 - K14638 ccaj:109818666 630.943