Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1970 atgttGAAGGCCAAGCTCCTTCGTTCGGGTAGTAATCCTTTGTGGGTTGCAGCTTTCTTCTTCAAAAACCTCAAGAGACCTCAAATCCTTGATACTGACATTTCCTCTTCTGTTGACAAGATTTTGCAAGATGAAATGGATGTTGTATCCTATAGAGTGCTGGGCTATCTTCTTCTTGGCGTTGTCAGAATATACTCAAAAAAGGTTGAATATGTGCTCGATGATTGCAATGAGGTActcattaaaatcaataaatttgtgATTAATAGAGAAGACTTGGCCCGTGTGGAAACTTTGCGTATGTCTGTTACTATACCAAACAGATTAGAGTTGGATGCTTTTGAGTTGGATGTACTTGAAGATGCGGGCGGAGGCCATACGGCCCATACTGCTCCTCCAGAAGACATTACTCTTAAAGCCAAAGAGGTTGTGTGTATAACTGAGGGATTTGGGCTGTTTCCTCAAGAGAAGTTTGAGGAGTTTGATGTCGGTGAAAACACCTGCTCTTTTGATCACCATATAGTGGAAAATGTTCGTCTATCTCACCTGTTGAACATGATGGACATTGAAGCTTTGTCACAAAATAGTCCAGTTGATTTACTCGAAAGCAGGGATATATTTCAAAGCAGCATATTTTCTCAAAAGGAACCAATGAACTTTGACAGTGTTTTAATAGAAGGACTAGAAAAAGAATCTGTCAGTTTGTCTGGTCAAGATCAACAAATTATTGAAGATCGGACAGTTGATGACATTGTACCATGTGAGGATGAAATACATGAAGAAAGCAGTAGAATCTCTCACAGGGAATCTATGGATATCGGTATGGTTTCTGGGAGAGAGAAGGAACATGTGTTATCTGTTGAagcatttaatgagtctcatcAAGTTGACAACGATCAGAGTTCCGCCAAGGAAACATCGAGCTCATTGTGCAAAATGAATCAGGAAATTATTGGAGTTCATGAGGCAAGAAGTTTTCAAGAAAGTATAGAAAAGCCTCAGGAAGAAAATTCCTATGAAAATGAATGCGTGCACCATGGCAATTCATCTGTTGCCAAGGAGATCCACGAAAAACTCATTGAAGAGTCTGTTGAAAAGCACGATAACAAAGGCAAATCAAAGTTTCAGGAAAAGGTTTCACTTGAAGATGAAAGGCTTAGTGTTATTCCACCAAAGTCAAAAAATCTTGATGTAACTCCTCAGTCTAAGTTTCAAGGTGACTCAGTTGGAAGACCAAAACGAGGTGCTACTACACCAGAGTCGATACTTATTTGTACACCAGCTGTGAGCCATGGCAATTCATCTGTTCGTAAGAAGATCCATGAAAAACACATTGAAGGGTCTGTTGAAAAGCATGATCACAAAGGCAAATCAAAGTTTCAGGAAAAGGTTTCAGTTGAAGATGAAAGGCTTAGTGTTATTCCACCAAAGTCAAAAAATCTTGATGTAACTCCTCAGTCTAAGTTTCAAGGTGACTCAGTTGGAAGACCAAAACGAGGTGCTACTACACCAGAGTCGATACTTATTTGTACACCAGCTGTGAGCCATGGCAATTCATCTGTTCGTAAGAAGATCCATGAAAAACACATTGAAGGGTCTGTTGAAAAGCATGATCACAAAGGCAAATCAAAGTTTCAGGAAAAGGTTTCAGTTGAAGATGAAAGGCTTAGTGTTATTCCATCAAAGTCAAAAAATCTTGATGTAACTCCTCAGTCTAAGTTTCAAGGTGATTCAGTTGGAAGACCAAAACAAGGTGCTACTACACCAGAGTCGATGCTTATTTCTACACCAGCTGTGAGAGAGCGCCCTCACTtttcaaggaaaagaaaagttgtCCTTGATGAAATGACTGTCCTGCCTAATAAGGTACTTAGAAAGAGCATACATGATGCAAGTGACTTAGTTTCTAACCGAAGAAAATCCCGGTGTACTCTACGTACTGTGCAGAGAGAATCTCTCATTTCCAGTCTTCCTAATAGATTCTATGAGCCTTTGCTTCCTGGTTGCTCCTCAGAGCTTCAAATCTTATcctctaaaaagaaaatgaaaataccaGATTCCCTTCAGATTGTGGAAACTTCAGGGAACTTAGACATGTCAGAATCTCAAACTGTTGGCAGTCCAGAGCATATAGCAACTGCTCCACTAATCCCTCCTCAATGCCCAGATGTAGCTGAATCTCAGGCTTCTGGCAGTCCAGAGCATATACCAACTCCTCCGTGCCAAGAAACAAAAGGCAGGTCAATTGAGCACCCAGCGAGAACTGAAATTCAAAACTTGGATAATTTAGAATGTTCTTGTCCACATGAAAGCATAGAGATAGAGCAATCCTTGGAAATGAATGAAGCGCTTAATCTGATGGATGAGGAGATAAATTCAAGTGGAACAGAGAATTCAGAATTATcAGCTGGGTGGTCTGATCGTACCAGGCAAGTTGCAAGTTACTTGAGGAAACAAAAAGAGGAGGATGTTGTAAACTTTTCACAAGTTTTTGGAGGCCGAGCCCGAAAAGAAAGTGCAAGGCTATTTTATGAAGTACTGGTTTTGAAAACTACAGGTTATGTAGATGTACAGCAAAACGAAGCTTATGGTGATATTGCAATCTCTAAACTCCCAAAATTAGACCAAACTTTTTGA 2637 0.3887 MLKAKLLRSGSNPLWVAAFFFKNLKRPQILDTDISSSVDKILQDEMDVVSYRVLGYLLLGVVRIYSKKVEYVLDDCNEVLIKINKFVINREDLARVETLRMSVTIPNRLELDAFELDVLEDAGGGHTAHTAPPEDITLKAKEVVCITEGFGLFPQEKFEEFDVGENTCSFDHHIVENVRLSHLLNMMDIEALSQNSPVDLLESRDIFQSSIFSQKEPMNFDSVLIEGLEKESVSLSGQDQQIIEDRTVDDIVPCEDEIHEESSRISHRESMDIGMVSGREKEHVLSVEAFNESHQVDNDQSSAKETSSSLCKMNQEIIGVHEARSFQESIEKPQEENSYENECVHHGNSSVAKEIHEKLIEESVEKHDNKGKSKFQEKVSLEDERLSVIPPKSKNLDVTPQSKFQGDSVGRPKRGATTPESILICTPAVSHGNSSVRKKIHEKHIEGSVEKHDHKGKSKFQEKVSVEDERLSVIPPKSKNLDVTPQSKFQGDSVGRPKRGATTPESILICTPAVSHGNSSVRKKIHEKHIEGSVEKHDHKGKSKFQEKVSVEDERLSVIPSKSKNLDVTPQSKFQGDSVGRPKQGATTPESMLISTPAVRERPHFSRKRKVVLDEMTVLPNKVLRKSIHDASDLVSNRRKSRCTLRTVQRESLISSLPNRFYEPLLPGCSSELQILSSKKKMKIPDSLQIVETSGNLDMSESQTVGSPEHIATAPLIPPQCPDVAESQASGSPEHIPTPPCQETKGRSIEHPARTEIQNLDNLECSCPHESIEIEQSLEMNEALNLMDEEINSSGTENSELSAGWSDRTRQVASYLRKQKEEDVVNFSQVFGGRARKESARLFYEVLVLKTTGYVDVQQNEAYGDIAISKLPKLDQTF 878
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1970 878 Pfam Conserved region of Rad21 / Rec8 like protein 821 873 IPR006909 -
Ssu4g1970 878 PANTHER SCC1 / RAD21 FAMILY MEMBER 1 440 IPR039781 GO:0007062|GO:0008278
Ssu4g1970 878 Gene3D Structural maintenance of chromosome 1. Chain E 806 878 IPR023093 -
Ssu4g1970 878 MobiDBLite consensus disorder prediction 448 502 - -
Ssu4g1970 878 MobiDBLite consensus disorder prediction 448 475 - -
Ssu4g1970 878 PANTHER SCC1 / RAD21 FAMILY MEMBER 537 878 IPR039781 GO:0007062|GO:0008278
Ssu4g1970 878 Pfam N terminus of Rad21 / Rec8 like protein 14 89 IPR006910 GO:0005515
Ssu4g1970 878 PANTHER SISTER CHROMATID COHESION 1 PROTEIN 2 1 440 - -
Ssu4g1970 878 SUPERFAMILY "Winged helix" DNA-binding domain 808 874 IPR036390 -
Ssu4g1970 878 MobiDBLite consensus disorder prediction 712 747 - -
Ssu4g1970 878 MobiDBLite consensus disorder prediction 391 417 - -
Ssu4g1970 878 PANTHER SISTER CHROMATID COHESION 1 PROTEIN 2 537 878 - -
Ssu4g1970 878 MobiDBLite consensus disorder prediction 565 590 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1970 Ssu-Chr4 37551518 37568385 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1970 K06670 - gmx:100810733 357.066