Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1962 ATGACTGAAAGTGAAATTGAGGTTAAAGGTTTGATTGAGGCTCTTGGACTTCAAGAAAAGCAACAATTTCCAATATCACAGCATAAGCGCTATATTGTGAAAAATGGGGCACCAGTTCTGGTACCCACAAATCCTGCTGCATTACTGAAGAGCAAACTGCTTTCTGCACAATCAAAGATCCAGGTCATTTTTGAACCATTTATGTGGAAAAGAAGTGACCCCTCTAATGTGTGTGATGAAAATTCTGAGGAAAGTGTTGGCAGGTTCTTTGAACGTCATTTTGGGAAAGAGGTTGTGGACTATCTGATTGATCCTCTTGTTGGAGGCACTAGTGCAGCAGATCCTGAATCTCTTTCTATGCGCCATTCTTTCCCAGAGCTATGGAATTTGGAGAAAAGGTTTGGCTCCATTATAGCTGGGGCTTTGCAATCTAAGTTATTTGCCAAAAGGGACAAAACTGGAGAAAATAAGGCCGCACTAaggaaaaacaaacataagCGTGGTTCATTTTCTTTCCATGGTGGGATGCAGACACTGACAGATACATTGTGCAAAGAGCTTGGCAAAGATGACCTTAAATTAAATGCAAAGGTTTTGACATTAGCTTATGGTCATGATGGAAGTTCCtcatctcaaaactggtctattACTTGTACTTCTAACCAAAGAACACAAGATGTTGATGCAGTAATCATGACGgCTCCTCTATATAATGTCAAGGACATCAAGATCACAACAAGGGGAACCCCCTTTCCACTTAATTTTCTTCCCGAGATAAGCTACGTGCCAATCTCAGTCATGATTACCACCTTCAAAAAGGAGAATGTAAAGAGACCTTTGGAGGGATTTGGAGTTCTTGTTCCttcaaaagaacaacaaaatggTTTAAAAACCCTTGGTACACTTTTTTCCTCTATGATGTTTCCAGATCGTGCACCTAGTGATTTATATCTCTATACCACCTTCATTGGCGGGATTCAAAACAGGAAACTGGCTCAGGCTTCAACTGATGAGCTTAAGAAAATTGTTACTTATGACCTGAGAAAGTTGTTGGGAGCAGAGGGGGAACCCACATTTGTTAACCATTTCTATTGGAGTAAAGGCTTTCCTTTGTATGGACGTAACTATGGGTCAGTTCTTGAAGCAATTGATAAGATGGAAAAAGAACTTCCTGGAATTTTCTTTGCAGGTAACTACAAAGGTGGACTCTCAGTTGGCAAAGCAATTGCCTCAGGCTGCAAAGCAGCTGATCTTGTAATATCCTACCTCAACTATGCTTCAGACAACACAGTGCCTGATAAATGA 1305 0.3908 MTESEIEVKGLIEALGLQEKQQFPISQHKRYIVKNGAPVLVPTNPAALLKSKLLSAQSKIQVIFEPFMWKRSDPSNVCDENSEESVGRFFERHFGKEVVDYLIDPLVGGTSAADPESLSMRHSFPELWNLEKRFGSIIAGALQSKLFAKRDKTGENKAALRKNKHKRGSFSFHGGMQTLTDTLCKELGKDDLKLNAKVLTLAYGHDGSSSSQNWSITCTSNQRTQDVDAVIMTAPLYNVKDIKITTRGTPFPLNFLPEISYVPISVMITTFKKENVKRPLEGFGVLVPSKEQQNGLKTLGTLFSSMMFPDRAPSDLYLYTTFIGGIQNRKLAQASTDELKKIVTYDLRKLLGAEGEPTFVNHFYWSKGFPLYGRNYGSVLEAIDKMEKELPGIFFAGNYKGGLSVGKAIASGCKAADLVISYLNYASDNTVPDK 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1962 434 Gene3D Protoporphyrinogen oxidase, mitochondrial; domain 2 3 372 - -
Ssu4g1962 434 Gene3D - 178 416 IPR036188 -
Ssu4g1962 434 Gene3D protoporphyrinogen ix oxidase, domain 3 41 147 - -
Ssu4g1962 434 SUPERFAMILY FAD/NAD(P)-binding domain 8 423 IPR036188 -
Ssu4g1962 434 PANTHER PROTOPORPHYRINOGEN OXIDASE 1 423 - -
Ssu4g1962 434 SUPERFAMILY FAD-linked reductases, C-terminal domain 260 370 - -
Ssu4g1962 434 TIGRFAM proto_IX_ox: protoporphyrinogen oxidase 9 423 IPR004572 GO:0004729|GO:0006779
Ssu4g1962 434 Pfam Flavin containing amine oxidoreductase 5 420 IPR002937 GO:0016491
Ssu4g1962 434 PANTHER PROTOPORPHYRINOGEN OXIDASE 1 423 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1962 Ssu-Chr4 37270259 37280904 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1962 K00231 - gmx:547941 814.683
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1962 4 37270259 37280904 Ssu4g1962 4 37270259 37280904 ECH