Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1959 ATGAAAGGAAAGAACAGGAGAAGTGGTGTTGCGGTTCATATGGAATACCTCATTCACATTCAGGAGATTAAGCCTTGGCCCCCATCACAATCTCTCAGATCCCTTCGTTCTGTGTTGATACAATGGGAGAATGGTGAACGCTATTCGGGGTCTACCGGTCTTGTTTCCCCTTCGCTCGGTCCTAATTCTGCTGCTGGTGAAGGAAAACTCGAGTTTAATGAGTCATTTAAGCTTCCTGTAACTCTTTCAAGGGATATGTCTATCAGGAGTAGTACTGCTGATGTGTTCCAAAAGAATTGCTTGGAGTTCAACTTGTACGAGACTCGGAGGGATAAGACTGTTAAAGGTCAGTTGCTGGGGACTGCCATCATAGACTTGGCAGATTGTGGCGTACTTAGAGAGACCTTGAACATTCGTACGCCGTTGAACTGCCAGAGGAACTACAGAAACATGGATCAGCCACTTTTGTTCATTCAAATTGAGCCTGTTGAAAAGAGTCGCCCTAGGTCCTTGTTGAAGGACAGCTTGTCAAAGGAGGTGTCAAAGGACAATAATGGCAGTGAATCTGTATCAACATTGATGAATGGAGAATATGCTGAGGAAGCTGAGATTGCCTCTTTTACTGATGATGATGTTTCCTCTCATTCATCTGCAGCTGCAGTCACTACTTCCTCTGAGTCTAGCGTGTGTATGCCTCCCGAACCAGAAGAGAATGAACCAAATGGACCAGCTCAAAACAATGATAGGAATGACAAGGAGCATCCCTTGGCATCAGAGACAAGAGTTGAAAAGTTGAATGTGAtgcaacaagatgcatatgagAGACTGGAGAGGAGTTCTTCCTATGTGTCATCTGTGGATGTATCCTCTGAAGTTGGGAGTCCAGTAAATGGTCATCCCTCTATGACAAGCACTCCCAATCATAGATCAGTGACAACCCAAAAGCAGGTTGCTTCTTCGAATGCTGATTTTTCTTCCCCAACCTTGGAGGAAAATTCTAAGAGCAGGTCCAGAAGCAGTGATCATGAAAATTTGGATCAGGAGGCTTGTGAAAAGGTTGCCAATTGTAAAAATATGGTTACAGGTGTTCAAATAAACGGTAATGAAAGTGCTCTCGATGTCTATTCTAGCAATGCTACACCTCTAGATAGTAATAGCCTCGTGGACAAGAATCCAAGCCTTGGTTTGGAAACCAATGACAAATTAGGTGAGAGACGTGAGGAAGCTGACAAATATCTTGTGGAGGGGGGAAGTGATCAACATTACTACAGTTCCATTGAGGATAAGCATGGAAATGaaatgtttcattttgataaGCAATACCATGTAGAAGATGAATCACTGGCACAAGGTGCGAAAGATCAAGTTCTATTGAATAGCAATTCATATTCTTTAGGTGGGTCAGATAATGGTATGAAAGGAAATATTCtgaaaaatgaaagattaaagcatgtgaAGTCTGTAAGGTCATCAGCAGACTCAGCTAGGAGTATTGGGTCACTTGGTAGCCATCATCTTGCTGAAGTAAAGGAAAATGGTGTTAATGGAGATATCCACAATAGTGGAGGGAACGTTAGAAGCAGTGACAGAAAAGATGCCAAGATTTATCCAAGGGAAGTCAGAAATGCCATTTTAGACAGCAAGATCGAGCCCTTGGAAAACAAGATAAAGATGCTTGAAGGAGAATTAAGAGAAGCTGCTGCTATTGAGGCTGCTTTATATTCAGTAGTTGCTGAGCATGGAAGTTCCATGAGTAAGGTTCATGCCCCAGCTCGGCGCCTTTCCAGGCTGTACCTTCATGCTTGCAAAGAAAACCTACAAGCAAGAAGGGCAGGGGCAGCTAAAAGTGCTGTTTCAGGATTAGTCCTTGTTGCAAAGGCATGTGGAAATGATGTCCCAAGGTTGACATTTTGGTTGTCTAATTCTGTTGTGCTGAGAACAATTATAAGCAAAACTACCGAAGACATGACACCATCTAATCATGCTGGATCTAGTACAAGAAGGAAGAATGGAGAAGGTAATGGCAAGGTAACACAACCATTAATATGGAGGGGGTTCTCTCCTAGGAAAAGCGAAAATACAGCAGTTGAATATGGAGGTATAAGTAACTGGGATGACCCAAATGTGTTCACATCAGCATTGGAAAAGGTGGAAGCTTGGATCTTCTCTCGCATTGTGGAATCTATTTGGTGGCAGTCTTTGACACCACATATGCAGCTTACTGATGCAAAGGTCACTCATAAGGATTCAGCAAACAACTATAAAAATATGTCTAGCTCATGTGATCAAGAGAAGGGAAATTTATCACTAGATATTTGGAAGAATGCTTTTAGAGAAGCCTGTGAAAGGCTTTGTCCTATCCGAGCTGGAGGGCATGAGTGCGGCTGTTTGTCTGTGCTGCCTAGATTGATAATGGAGCAGTGTGTGGCAAGATTAGATGTTGCTATGTTCAATGCCATTCTTCGGGAATGTGCTGATGATATTCCAACTGATCCTGTATCTGATCCCATTAGTGATCCCAAGGTTCTCCCCATTCCACCTGGCAAATCAAGCTTTGGAGCTGGTGCACAGCTAAAAACTGCGATTGGCAACTGGTCTAGATGGCTGACTGACCTATTTGGTATGGATGATGATGACTCACTCGAGGATAGAGACGATGATGACCTTGACAGCAATGATGGAAGTCAAAATACATCCTTCAAGTCCTTCCATCTTCTCAATGCATTAAGCGACCTCCTGATGCTTCCCAAGGATATGCTGTTAAGTGCATCCATCAGGAAAGAGGTGTGCCCAATGTTTAGTGCATCGTTAATCAAGAGGATTCTAGACAATTTTGTCCCAGATGAGTTTTGCCCCGATCCAATTCCCACTGATGTTTTTGAAGCTCTGGACTCACAGGATGATCTTGAGGATGGAAATGAGTCTATCAACAACTTCCCATGCAATGCAGCTCCCATTGTATATTCGCCTCCACTGGCAACTACCATTACTGGGGAGATTGGAAGTGAATCTCAGCTGAGAAGAAGCAAATCTTCTGTTGTTAGGAAGTCATACACCAGTGATGATGAACTTGATGAACTAAACTATCCATTATCTTTAATATTGGCTAGTGGCTCCTCCTCACCAGCATCAACAAAGCACAATTGGAAGTTGAAAGAAAGTCGCGATGAATGTGCCATCAGATATGAACTCCTCAGGGATGTTTGGACGAACAGTGAATGA 3222 0.424 MKGKNRRSGVAVHMEYLIHIQEIKPWPPSQSLRSLRSVLIQWENGERYSGSTGLVSPSLGPNSAAGEGKLEFNESFKLPVTLSRDMSIRSSTADVFQKNCLEFNLYETRRDKTVKGQLLGTAIIDLADCGVLRETLNIRTPLNCQRNYRNMDQPLLFIQIEPVEKSRPRSLLKDSLSKEVSKDNNGSESVSTLMNGEYAEEAEIASFTDDDVSSHSSAAAVTTSSESSVCMPPEPEENEPNGPAQNNDRNDKEHPLASETRVEKLNVMQQDAYERLERSSSYVSSVDVSSEVGSPVNGHPSMTSTPNHRSVTTQKQVASSNADFSSPTLEENSKSRSRSSDHENLDQEACEKVANCKNMVTGVQINGNESALDVYSSNATPLDSNSLVDKNPSLGLETNDKLGERREEADKYLVEGGSDQHYYSSIEDKHGNEMFHFDKQYHVEDESLAQGAKDQVLLNSNSYSLGGSDNGMKGNILKNERLKHVKSVRSSADSARSIGSLGSHHLAEVKENGVNGDIHNSGGNVRSSDRKDAKIYPREVRNAILDSKIEPLENKIKMLEGELREAAAIEAALYSVVAEHGSSMSKVHAPARRLSRLYLHACKENLQARRAGAAKSAVSGLVLVAKACGNDVPRLTFWLSNSVVLRTIISKTTEDMTPSNHAGSSTRRKNGEGNGKVTQPLIWRGFSPRKSENTAVEYGGISNWDDPNVFTSALEKVEAWIFSRIVESIWWQSLTPHMQLTDAKVTHKDSANNYKNMSSSCDQEKGNLSLDIWKNAFREACERLCPIRAGGHECGCLSVLPRLIMEQCVARLDVAMFNAILRECADDIPTDPVSDPISDPKVLPIPPGKSSFGAGAQLKTAIGNWSRWLTDLFGMDDDDSLEDRDDDDLDSNDGSQNTSFKSFHLLNALSDLLMLPKDMLLSASIRKEVCPMFSASLIKRILDNFVPDEFCPDPIPTDVFEALDSQDDLEDGNESINNFPCNAAPIVYSPPLATTITGEIGSESQLRRSKSSVVRKSYTSDDELDELNYPLSLILASGSSSPASTKHNWKLKESRDECAIRYELLRDVWTNSE 1073
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1959 1073 MobiDBLite consensus disorder prediction 246 260 - -
Ssu4g1959 1073 PANTHER NUCLEAR PORE COMPLEX PROTEIN NUP205 2 1073 IPR021827 GO:0005643
Ssu4g1959 1073 MobiDBLite consensus disorder prediction 286 346 - -
Ssu4g1959 1073 PANTHER EEIG1/EHBP1 PROTEIN AMINO-TERMINAL DOMAIN PROTEIN 2 1073 - -
Ssu4g1959 1073 Coils Coil 549 569 - -
Ssu4g1959 1073 MobiDBLite consensus disorder prediction 655 673 - -
Ssu4g1959 1073 MobiDBLite consensus disorder prediction 513 532 - -
Ssu4g1959 1073 MobiDBLite consensus disorder prediction 208 264 - -
Ssu4g1959 1073 MobiDBLite consensus disorder prediction 209 231 - -
Ssu4g1959 1073 ProSiteProfiles C2 NT-type domain profile. 4 164 IPR019448 -
Ssu4g1959 1073 MobiDBLite consensus disorder prediction 286 333 - -
Ssu4g1959 1073 MobiDBLite consensus disorder prediction 168 191 - -
Ssu4g1959 1073 MobiDBLite consensus disorder prediction 655 679 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1959 Ssu-Chr4 37201533 37207356 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1959 - - gmx:100783487 1749.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1959 4 37201533 37207356 Ssu4g1959 4 37201533 37207356 ECH
Ssu4g1959 4 37201533 37207356 Ssu9g0455 9 22697364 22699141 PCT