Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1955 atggGAGTGACACCCAAAATTGCCCCTTCGATGCTCTCTTCCGACTTCGCCAATTTGGCTTCCGAGGCTCATCGCATGCTCAACTGCGGCGCCGATTGGCTCCACATGGACATCATGGATGGGCATTTTGTTCCCAATTTAACTATTGGTGCTCCAGTTATTGAAAGTTTGAGAAAGCACACAAAGGCGTATTTGGATTGTCACCTTATGGTTACAAATCCTCTTGATTATGTCGAACCCTTGGCAAAAGCTGGTGCTTCTGGTTTTACATTTCATGTAGAGATATCAAAAAATAACTGGAAAGAACTTGTCCAAAGAATTAAGTCACATGGCATGAAGCCTGGTGTAGCATTAAAGCCTGGGACCCCCATTGGAGAGGTTTATCCTCTGGTTTGTATTTTCCCCCCTCTGGTTCTCATATGGTCACACCTGTATAGCTGGATTTtattatcatcttttatcttcTGTGAGTATCGTGAGTCTTTGTGCATAAACTTGAGAACAGATACAATATCTCTTGACTGA 525 0.4171 MGVTPKIAPSMLSSDFANLASEAHRMLNCGADWLHMDIMDGHFVPNLTIGAPVIESLRKHTKAYLDCHLMVTNPLDYVEPLAKAGASGFTFHVEISKNNWKELVQRIKSHGMKPGVALKPGTPIGEVYPLVCIFPPLVLIWSHLYSWILLSSFIFCEYRESLCINLRTDTISLD 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1955 174 CDD RPE 6 131 IPR000056 GO:0005975|GO:0016857
Ssu4g1955 174 Pfam Ribulose-phosphate 3 epimerase family 6 130 IPR000056 GO:0005975|GO:0016857
Ssu4g1955 174 PANTHER RIBULOSE-5-PHOSPHATE-3-EPIMERASE 1 130 IPR000056 GO:0005975|GO:0016857
Ssu4g1955 174 Gene3D Aldolase class I 1 142 IPR013785 -
Ssu4g1955 174 ProSitePatterns Ribulose-phosphate 3-epimerase family signature 1. 34 48 IPR000056 GO:0005975|GO:0016857
Ssu4g1955 174 PANTHER RIBULOSE-PHOSPHATE 3-EPIMERASE 1 130 - -
Ssu4g1955 174 SUPERFAMILY Ribulose-phoshate binding barrel 5 142 IPR011060 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1955 Ssu-Chr4 37142002 37145245 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1955 K01783 - gmx:100527490 256.144
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1955 4 37142002 37145245 Ssu4g1955 4 37142002 37145245 ECH