Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1953 ATGATGCAATCAATAATATATCGTACTATTATTGTTGGTGATTCCCGTTGCATATGTTGTGCCTCTGCAAATTTGTGTTCTTCTCTAGGAACTAGACACTTTTCACACAAAGAACAATGTGAAGAAGACCTTACCAAGTATATGGACATTCTCACTGCAAAACTAGGCAAAGGAAGCAGTGAGGATCAAACCCTTCACACTCTGTGTAATGATCAAGCTTGTGATGCCATACCCCTCTCCCAAAACCTTGTTCACCGGTTGCTCCGGCGATACAAGGATGATTGGAAGTCTGCATTGGGGGTGTTCAAATGGGCCAGTTCGCGGTTGAGCTTTAGACATTCGCCGGAGTCGTATGATATGATGGTGGACATATTGGGTAGAATGAAGGTTATGGAAAAGTTGAGAGATTTCTTAGAAGAAATGCGTGAGGGCGGTCTTGTCACTATGAATACCGTGGCAAAGGTAATGAGACGGTTTGTTGGGGCGGGGCAGTGGGTAGATGCTGTGAGGATATTTGATGACTTGCAAGCTCTTGGGTTGGAGAAGAACACGGAATCTATGAACTTGTTGCTTGATGCCCTGTGCAAAGAGAGATTTGTGGAGCAAGCTCGCGAAATTTTCTTGGAGCTGAAGCAGCACATTGCTCCGAATGCTCACACGTTTAACATATTCATTCATGGATGGTGCAAAGTCTGCCGTGTGGACGAGGCGCATTGGACAATCCAAGAGATGAAAGGATACGGTTGTCGCCCTTGTGTTATAAGTTATTCCACCATCATTCAGTGTTACTGTCAAGAAGGGAATTTCGGCAGGGTGTATGAGCTTCTTGATGAAATGCAGGCTCAAGGTTGCTCCCCAAATGTGATAACTTATACAACTGTCATGTGTGCACTGGCAAAGGCCGAAAAATTTGAGGAAGCTTTGGAAGTACCCAAGAGAATGAGGTCTTCTGGATGTAGGCCTGATACACTTTTCTGCAATTCGTTCATTTATACATTGGGGAGAGCAGGAAGATTAGATGATGCTGCCTATGTATTCAAGGTGGAAATGCCTAAGGCTGGTGTTGTGCCAAATACATCCACCTATAATTCAATGATTTCTATGTTTTGTCATTATGCACAAGAAAAGAGAGCTTTTGAAATACTGAAGGAGATGGAAAATTCTGGCAATTGTAAGCCTGATGCTCAGACTTACCACCCATTGATCAAGTCTAGCTTTAGAACTGGAAAAATAGATAGGTTGTTGAATGACATATTAAATGACatgattaataaatatcatCTCAGTCTTGATCTTTCAACCTATACACTGCTAATTCACGGGCTTTGTGGAGCAGAAAGATGCAATTGGGCATTCTCCCTGTTTGAGAAGATGATTGATCAAGATATAATACCTAGATACAGAACTTGCCGTTTGCTATTGGATGAAGTCAAGCAGCAAAATATGTATCAAGCTGCTGAGAAAATTGAGGATCTTATGAAAAAGTTGTAA 1491 0.4178 MMQSIIYRTIIVGDSRCICCASANLCSSLGTRHFSHKEQCEEDLTKYMDILTAKLGKGSSEDQTLHTLCNDQACDAIPLSQNLVHRLLRRYKDDWKSALGVFKWASSRLSFRHSPESYDMMVDILGRMKVMEKLRDFLEEMREGGLVTMNTVAKVMRRFVGAGQWVDAVRIFDDLQALGLEKNTESMNLLLDALCKERFVEQAREIFLELKQHIAPNAHTFNIFIHGWCKVCRVDEAHWTIQEMKGYGCRPCVISYSTIIQCYCQEGNFGRVYELLDEMQAQGCSPNVITYTTVMCALAKAEKFEEALEVPKRMRSSGCRPDTLFCNSFIYTLGRAGRLDDAAYVFKVEMPKAGVVPNTSTYNSMISMFCHYAQEKRAFEILKEMENSGNCKPDAQTYHPLIKSSFRTGKIDRLLNDILNDMINKYHLSLDLSTYTLLIHGLCGAERCNWAFSLFEKMIDQDIIPRYRTCRLLLDEVKQQNMYQAAEKIEDLMKKL 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1953 496 Pfam PPR repeat 428 458 IPR002885 -
Ssu4g1953 496 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 252 286 IPR002885 -
Ssu4g1953 496 Gene3D Tetratricopeptide repeat domain 209 280 IPR011990 GO:0005515
Ssu4g1953 496 Gene3D Tetratricopeptide repeat domain 281 349 IPR011990 GO:0005515
Ssu4g1953 496 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 287 321 IPR002885 -
Ssu4g1953 496 Gene3D Tetratricopeptide repeat domain 50 201 IPR011990 GO:0005515
Ssu4g1953 496 PANTHER OS02G0601600 PROTEIN 22 496 - -
Ssu4g1953 496 Gene3D Tetratricopeptide repeat domain 350 496 IPR011990 GO:0005515
Ssu4g1953 496 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 217 251 IPR002885 -
Ssu4g1953 496 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 322 357 IPR002885 -
Ssu4g1953 496 Pfam PPR repeat family 182 230 IPR002885 -
Ssu4g1953 496 Pfam PPR repeat family 251 300 IPR002885 -
Ssu4g1953 496 Pfam PPR repeat family 357 404 IPR002885 -
Ssu4g1953 496 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 358 392 IPR002885 -
Ssu4g1953 496 TIGRFAM PPR: pentatricopeptide repeat domain 289 323 IPR002885 -
Ssu4g1953 496 TIGRFAM PPR: pentatricopeptide repeat domain 254 288 IPR002885 -
Ssu4g1953 496 TIGRFAM PPR: pentatricopeptide repeat domain 326 359 IPR002885 -
Ssu4g1953 496 TIGRFAM PPR: pentatricopeptide repeat domain 219 251 IPR002885 -
Ssu4g1953 496 TIGRFAM PPR: pentatricopeptide repeat domain 434 465 IPR002885 -
Ssu4g1953 496 TIGRFAM PPR: pentatricopeptide repeat domain 361 395 IPR002885 -
Ssu4g1953 496 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 114 148 IPR002885 -
Ssu4g1953 496 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 183 213 IPR002885 -
Ssu4g1953 496 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL 22 496 - -
Ssu4g1953 496 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 431 465 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1953 Ssu-Chr4 37088095 37089585 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1953 190 495 Miscellaneous Gene Families AT4G11690 28.065 2.55e-35 136
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1953 - - vra:106777545 875.544