Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1941 ATGACTAGTAAAAAAGCATTACCTGTCCCAACCTTTGGTAGTGGCTTTTGTTTCAGTTACCATAGTTCCCAAAAGATGAGAGTTCTGGAGTTATCACCCTCTGATGGCAATGGTTCCTCTACTAATGAAGATGAACCTGTACCTCAGGATGCAGATTATAGCAATGTTCTGAGTCTTAGTGATGAGTTAGAGACTTCAATCTTGGCAAGATTTCCAAGATCACAGCACTGGAAATTGTGCTTTCTAAACAAGCGATTCTTGGCTCTAGCGAAGAGTGGTGAGATCTACAAAATCAGGAGAGAGTTAGGATTCAAAGAACCTTCAGTGTTCATGCTAGCCAGTGGGGAGAGCAATTGGTGGGGAATGGAGTGGCCTTTCAAGTCAAGCAGGAAGCTCCCTCCTATTCAATCAGATTATAGTTTTGAGTTTGGAGATAAGGAGTCATTTTGTGCAGGGTCCCACCTATTAGTCTCAGGCAAGGAGATTGATGGGGCAGTTATTTGGAGGCttgattcaataaaaaatgaatggcTCAAAGGGCCATCTATGATCAACCCAAGGTGTCTTTTTGCATCAGCCACGTGTGGTACTATTGCTTTTGTTGCTGGGGGGCTGGATGCAAGAACTTACACCCAAGTCTTGGATTCTGCTGAGAAGTACAATTCTGAAAGCCAGTGTTGGGAACCCCTCCCAAGGATGAACAAAAAGAGGAAGTTTTGCTCAGGTTGTTTCATGGATAACAAGTTCTATGTCCTTGGAGGACAAGATGAGCATGGGAAGGACCTCACTTGTGGGGAATTCTTTGATGGGAAGACAAGCAGGTGGAACTTGATTCCAGACATGTGGAAGGATATTCCTCTGTGTGTTTCACAGTCACCACCTCTTCTTGCTGTTGTCAATAATGAGTTGTACACACTGGATGCTTCTTCCAATGAGCTGAAAGTATATGTGAAGGGAAACAACTCATGGAAGACTTTGGGAGTGGTTCCTGTGAGAGCTGATGCTCAAGGAGGTTGGGGTGTGGCATTTAAATCTCTAGGTGATGAGTTACTTGTTATTGGTGCACCTTCTGTGTCACATGCAGAGCGTGCCTTGTGTATGTACACTTGCTGCCCTGATCCTGCTGATGAGAAATTGAGGTGGCGGCAAATTGGATGTGGCAGCATTCAGCTCAATCACTTTATCCGAAATTGTGCTGTGATGGGGACCTGA 1212 0.4406 MTSKKALPVPTFGSGFCFSYHSSQKMRVLELSPSDGNGSSTNEDEPVPQDADYSNVLSLSDELETSILARFPRSQHWKLCFLNKRFLALAKSGEIYKIRRELGFKEPSVFMLASGESNWWGMEWPFKSSRKLPPIQSDYSFEFGDKESFCAGSHLLVSGKEIDGAVIWRLDSIKNEWLKGPSMINPRCLFASATCGTIAFVAGGLDARTYTQVLDSAEKYNSESQCWEPLPRMNKKRKFCSGCFMDNKFYVLGGQDEHGKDLTCGEFFDGKTSRWNLIPDMWKDIPLCVSQSPPLLAVVNNELYTLDASSNELKVYVKGNNSWKTLGVVPVRADAQGGWGVAFKSLGDELLVIGAPSVSHAERALCMYTCCPDPADEKLRWRQIGCGSIQLNHFIRNCAVMGT 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1941 403 Gene3D - 108 384 IPR015915 GO:0005515
Ssu4g1941 403 MobiDBLite consensus disorder prediction 31 51 - -
Ssu4g1941 403 SUPERFAMILY Kelch motif 149 376 IPR015915 GO:0005515
Ssu4g1941 403 PANTHER GALACTOSE OXIDASE/KELCH REPEAT PROTEIN-RELATED 1 402 - -
Ssu4g1941 403 SMART kelc_smart 198 247 IPR006652 GO:0005515
Ssu4g1941 403 SMART kelc_smart 154 197 IPR006652 GO:0005515
Ssu4g1941 403 PANTHER GALACTOSE OXIDASE/KELCH REPEAT PROTEIN 1 402 - -
Ssu4g1941 403 Pfam Kelch motif 186 234 IPR006652 GO:0005515
Ssu4g1941 403 Pfam Kelch motif 237 281 IPR006652 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1941 Ssu-Chr4 36709610 36710821 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1941 57 278 Miscellaneous Gene Families AT4G33900 25.108 1.51e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1941 - - gmx:100777338 775.393
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1941 4 36709610 36710821 Ssu4g1941 4 36709610 36710821 ECH