Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1937 ATGTTGGCGCCAAAGTCATCATCGCCGCTAAGAACCCTGTCAACTCTGGCACACCTCGCCGACAAATGCACGACCCTGGAGCAGCTGAAACAGGTCCACGCCCAGATGATCGTCTCCGCCGTGATCGCCACCGACCCGTTCGCCGTGAGCCGCTTGTTCTCCTCCTGCGCCCTCTCCCCCTTCGGCGACCTCTCCCACGCTTCCAGAATCTTCCGCTCCGCCACCCCCCGCCCCAACGCCTTCATGTGGAACACGCTCATCCGCGCCCAGCCCCACGCGCCCCACGCGCTCTCCCTCTACGTCACCATGCGCCGAACGCGCGTCTCCCCCGGCAAACACACCTTCCCCTTCCTCCTCAAGGCGTGCTCCCAGTTGCGCTCGTTGCGAGCCTGCAAACAGGTCCACGTCCACGTCATCAGGTTCGGGTTGGCCTCCGACTCCCACGTGGTTAACGCTTTGGTCCGGTGTTACTCCGTGTCGGGCAACTGCGTCGATGCCCGTCACGTGTTCGATGAAAGTCCCGACAGAAGCTCGAGCCTCTGGACCACGATGATTTGTGGGTACGCGCAGAATTTCTGCTCCAACGAGGCTTTGGAGCTTTTTGATGAGATGGTTGGGGAGGGATTTGAGCCAGGCGGTGCGACCCTGGCTTCGGTGTTGTCTGCGTGTGCCCGGTCAGGGTGTCTCGAGCTCGGGGAAAGGATTCATGAGTTTATGAAGGTGAAAGGGGTTGGACTTGGAGAGGGAGTGATTCTTGGGACGGCGTTGGTTTACATGTATGCGAAGAATGGGGAGATTGAGATGGCGCGGAAGCTGTTCGATGGAATGCCGGAGAGGAATGTTGTTACTTGGAATGCTATGATCTGTGGGTTGGGTGCTCATGGACATGTGGAGGATGCTCTTGATTTGTTTGAGAGGATGAAGAAGGAGCGGGCTGTTGTTCCCAATGGTGTCACCTTTGTGGGTGTTTTATCGGCTTGTTGTCACGCTGGGTTGATTGATGTTGGTCGAGAGGCTTTTCGTTTGATGAAGTCAGTGTATGGAATTGAGCCGAAGATTGAGCATTATGGGTGTTTGGTTGATCTTCTTGGGCGAGGGGGGAGGTTGCTGGAGGCGGAGGAACTGGTGAAAGGAATGCCGTGGAAGGCTGATGTGGTTATTTTGGGAGCTTTGTTGGCAGCTAGCAGGAATAGTGGGAATACTCAGGTTGCTGAAAGAGTGGTGAAGGAAATTCTTGCTCTGGAACCTCAGAATCATGGGGTTCATGTTGCTTTGTCAAATATGTATGCGGAGGCTGGACAGTGGCAGGAAGTTTTGAGACTGAGGAAGACGATGAAAGAAGAGAGACTCAAGAAGGCTCCAGGGTGGAGCCTTGTCGCCACCTAG 1386 0.5577 MLAPKSSSPLRTLSTLAHLADKCTTLEQLKQVHAQMIVSAVIATDPFAVSRLFSSCALSPFGDLSHASRIFRSATPRPNAFMWNTLIRAQPHAPHALSLYVTMRRTRVSPGKHTFPFLLKACSQLRSLRACKQVHVHVIRFGLASDSHVVNALVRCYSVSGNCVDARHVFDESPDRSSSLWTTMICGYAQNFCSNEALELFDEMVGEGFEPGGATLASVLSACARSGCLELGERIHEFMKVKGVGLGEGVILGTALVYMYAKNGEIEMARKLFDGMPERNVVTWNAMICGLGAHGHVEDALDLFERMKKERAVVPNGVTFVGVLSACCHAGLIDVGREAFRLMKSVYGIEPKIEHYGCLVDLLGRGGRLLEAEELVKGMPWKADVVILGALLAASRNSGNTQVAERVVKEILALEPQNHGVHVALSNMYAEAGQWQEVLRLRKTMKEERLKKAPGWSLVAT 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1937 461 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 11 460 - -
Ssu4g1937 461 Pfam E motif 400 459 IPR046848 -
Ssu4g1937 461 Gene3D Tetratricopeptide repeat domain 312 424 IPR011990 GO:0005515
Ssu4g1937 461 Gene3D Tetratricopeptide repeat domain 249 311 IPR011990 GO:0005515
Ssu4g1937 461 Gene3D Tetratricopeptide repeat domain 90 248 IPR011990 GO:0005515
Ssu4g1937 461 TIGRFAM PPR: pentatricopeptide repeat domain 282 315 IPR002885 -
Ssu4g1937 461 TIGRFAM PPR: pentatricopeptide repeat domain 180 211 IPR002885 -
Ssu4g1937 461 TIGRFAM PPR: pentatricopeptide repeat domain 254 282 IPR002885 -
Ssu4g1937 461 TIGRFAM PPR: pentatricopeptide repeat domain 318 351 IPR002885 -
Ssu4g1937 461 PANTHER OS11G0483950 PROTEIN 11 460 - -
Ssu4g1937 461 Pfam PPR repeat 355 380 IPR002885 -
Ssu4g1937 461 Pfam PPR repeat 180 209 IPR002885 -
Ssu4g1937 461 Pfam PPR repeat 150 172 IPR002885 -
Ssu4g1937 461 Pfam PPR repeat 218 244 IPR002885 -
Ssu4g1937 461 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 177 211 IPR002885 -
Ssu4g1937 461 Pfam PPR repeat family 279 329 IPR002885 -
Ssu4g1937 461 SUPERFAMILY TPR-like 259 437 IPR011990 GO:0005515
Ssu4g1937 461 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 280 314 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1937 Ssu-Chr4 36624331 36625716 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1937 15 459 Glycoside Hydrolase AT3G49170 33.333 7.29e-74 246
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1937 - - gmx:113000421 783.097