Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1900 ATGCCGGAGGAAGAAGTAGTGGAGCTCAAGTTCCGTCTCTACGACGGATCCGATATCGGACCCTTCCGTTACTCCCCTGCGTCCACTGTGGCCGTGCTCAAGGACCGGATTTTCGCAGAGTGGCCCAAAGACAAGAAAATTATACCGAAGGCAGCAAATGATATAAAACTGATAAGTGCTGGCAAAATTTTGGAGAACAACAAGACAGTTGGCCAGTGTAGGGTACCTTTTGGTGAGCTTCCTAAAGGAGGTATCACCATGCATGTTGTGGTCCAGCCATCTTTGCTCAAAGCAAAAACAGAGAAAAAAGTTGATCAGGTGCCCAGAAAACATATATGTGCATGTTCGATATTGTGA 357 0.465 MPEEEVVELKFRLYDGSDIGPFRYSPASTVAVLKDRIFAEWPKDKKIIPKAANDIKLISAGKILENNKTVGQCRVPFGELPKGGITMHVVVQPSLLKAKTEKKVDQVPRKHICACSIL 118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1900 118 Pfam Ubiquitin-2 like Rad60 SUMO-like 6 116 IPR039540 -
Ssu4g1900 118 PANTHER MEMBRANE-ANCHORED UBIQUITIN-FOLD PROTEIN 4 1 118 - -
Ssu4g1900 118 Gene3D - 1 100 - -
Ssu4g1900 118 CDD Ubl_MUBs_plant 7 93 - -
Ssu4g1900 118 PIRSF MUB 1 118 IPR017000 -
Ssu4g1900 118 SUPERFAMILY Ubiquitin-like 2 95 IPR029071 -
Ssu4g1900 118 PANTHER UBIQUITIN-LIKE PROTEIN 3 HCG-1 PROTEIN 1 118 IPR040015 -
Ssu4g1900 118 ProSiteProfiles Ubiquitin domain profile. 7 75 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1900 Ssu-Chr4 35251951 35256221 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1900 - - gmx:100500075 231.106
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1900 4 35251951 35256221 Ssu4g1900 4 35251951 35256221 ECH