Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1898 ATGGGTAGCACATTTAATCCACAGATTTTAGTGGAAAAACTAGCCAAGCTGAATGGTTCACAAACAAGCATAGAGACTTTGTCACATTGGTGCATTTTTCATATGAACAAAGCCAAACAAGTTGTTGAAACGTGGGATAGACAGTTTCATAGTTCTCCACGTGAGAAGAGATTGGCATTTCTGTATCTTGCAAATGATATTTTACAGAACAGCAGGCGAAAGGGTTCTGAATTTGTAGGTGAATTCTGGAAGGTTCTTCCAGATGCTCTTCGAGATGTGATTCAAAATGGAGATGATTTTGCTAGGAATGCAGCGCTTCGGCTGATTGGTATATgggaagagagaaaagtttttGGTTCTCGCGGTCAAATTCTGAAGGAAGAGTTTGTTGGGAGGCATGTGGAAGATAATAGCCGGGATGTGAAACCTACAAATATGAAACTGAGGTCATCTACGGGTAATGCATTGGAGAAAATAGTTTCAGGTTTTCATGTTGTTTATGGAGGGCAAACAGGTGAAGAAGCTGTATTGAGCAAATGCAGGAATGCCATAAACTGTCTTGATAAGGCAGATAAGGAAATAGGTCACGATGGTAATTCAGGGCAATTTGGTGGATCTACACTAGTGGATGAGCTCCAAGGGCATAATGCAGTACTGAAGGATTGCATTGAGCAATTAACAGCCATAGAGTCATTAAGAGCTAGTCTTGTGTCTCACCTGAGAGAAGCTCTCGAGGATCAGGAAGTCAAGTTGGGTCAAGTTCGTAGCCAGATTCAGGCTGCACATGTTCAGTCAGAACGGGCGAGTAACACCTGCCGACAATTACTGAATGGCAACAACATTCAGTCATTAGCTGAGCAGAGCTCAAAGGAAATTCAAACCTCCATGACACCTTCAAGTTTTAATATTTCTGGCGAAAGGGAGCAATCAGCTCCATTGATGTACACGCCGCAAGTGTCATTTTCTCAGAAATCTGGACACATTGAGGAAGATCCACGCAAGTCTGCAGCTGCTGCGGTGGCAGCAAAACTGACTGCTTCAACATCCTCTGCACAGATGCTATCTTATGTGCTGTCCTCCCTAGCATCAGAAGGTGTCATAGGCAATCCAATGAAAGAGTCTTCAGCCGATTATCACTCTGAGAAGAGGACCAAGCTTGAGAATGACCAGCCATCTTTTATACTTTCTCAGAATCCTCAACAGCCACTTCCTCCCTTTTCACTTTCTGATTCTATTCAACACAATGCACCTACAACCAACCAGCAACCTACTCCCAATGAACCACCACCTCCCCCTCATCATCACCTCccccattgccaccaccacctccaatGTCACAGTACCCTGTGCCGCAGTTCATGCAGACTGCTGGATCCATTAGTAGTATGGTATACAGCTATGGCATGA 1407 0.4257 MGSTFNPQILVEKLAKLNGSQTSIETLSHWCIFHMNKAKQVVETWDRQFHSSPREKRLAFLYLANDILQNSRRKGSEFVGEFWKVLPDALRDVIQNGDDFARNAALRLIGIWEERKVFGSRGQILKEEFVGRHVEDNSRDVKPTNMKLRSSTGNALEKIVSGFHVVYGGQTGEEAVLSKCRNAINCLDKADKEIGHDGNSGQFGGSTLVDELQGHNAVLKDCIEQLTAIESLRASLVSHLREALEDQEVKLGQVRSQIQAAHVQSERASNTCRQLLNGNNIQSLAEQSSKEIQTSMTPSSFNISGEREQSAPLMYTPQVSFSQKSGHIEEDPRKSAAAAVAAKLTASTSSAQMLSYVLSSLASEGVIGNPMKESSADYHSEKRTKLENDQPSFILSQNPQQPLPPFSLSDSIQHNAPTTNQQPTPNEPPPPPHHHLPHCHHHLQCHSTLCRSSCRLLDPLVVWYTAMA 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1898 468 SMART 558neu5 9 130 IPR006569 -
Ssu4g1898 468 SUPERFAMILY ENTH/VHS domain 12 117 IPR008942 -
Ssu4g1898 468 Gene3D - 2 129 IPR008942 -
Ssu4g1898 468 MobiDBLite consensus disorder prediction 393 435 - -
Ssu4g1898 468 PANTHER OS01G0925000 PROTEIN 1 437 - -
Ssu4g1898 468 Pfam CID domain 9 120 IPR006569 -
Ssu4g1898 468 ProSiteProfiles CID domain profile. 2 134 IPR006569 -
Ssu4g1898 468 CDD CID_RPRD_like 7 128 - -
Ssu4g1898 468 MobiDBLite consensus disorder prediction 393 421 - -
Ssu4g1898 468 PANTHER CYCLIN-DEPENDENT KINASE INHIBITOR-RELATED PROTEIN 1 437 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1898 Ssu-Chr4 35166762 35192200 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1898 K15559 - gmx:100806108 728.013
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1898 4 35166762 35192200 Ssu4g1898 4 35166762 35192200 ECH