Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1876 ATGGGGTGCACTTACTCTGTGTATAGGAAGAAAAAGTCAAGCTTCCCTGAAGTGGTGGTCTTTGTTCCATCAACAAGAATTCCGGTGCAATCTGATCTTCAAAGGGTGCTTAAAGGAGTAATTCCACGGGATCTCACTGATAAATTGACTTCACTAAGGAATCAGATAGTGTTGGTAGCAGAGGATACTGGTGGGTCAGCTATAGCTGAATTGCGGCGAGCTTTGAATGAATATTTGTCTGTTCTGATTGGACTTACTAAGAAAGAGTATGGTCTTGAAGGACTAATAGAATTCAAGTGGAAAAATTTAGAAGATGGGAGACAAGATAGCAGTATAGCAAATACCTGGTTTGAGGTGCTATCTGCAGTTCACCTTATGGCTATGCTGACATTGTCTGAGGCTGACTCACTGATGATTCCAAAGGACTCCTCAGGCTCTGGATTCAGGGTTGTATCTTCAGATAGCAAGAGGGAATCAATTGATTTGTTACTCAAGGCATCAGGATACCTCGAGTTCTGTGTAAGGGATATTCTTACTCGGATACCTGCTGAAACCAAGAAAACTTTTCCCCACGACTTGCAGGAGGGTGCATTGGAGGCTATTGCTATTCAAACACTAGGCCAGGGAACTGAGATTCAGCTTGGTCTTGCGTTGGAAAGTCAGAAGGCAACTTTGTCTGTGAAGAGGAGGTTGGCATGTGAACAGCTGATTTACTTTAGTCAGGCTTACCACTGCTTGTCTAGATGCGACATCAACCAAGGGCATGGAAGGAAGCATCTCCGATTCATCAAATGGAAATTCCTTGAAGCCAAGGCTGCAGCCTACTACTACCATGGTCTGATCCTTGACAAGGGTAATGAACCAAGCAGTCACATTGGTGCTGTGTCTTGTTTTCTTGCTGCAGAAGAACTTCTGGCAGAAAGCAAGAAGGCCTGCTTAAGCTTTTGCCTTGCAGCTCCAGTGACAAGGGCTCCTCCACTCTGGGGTgctatgaaatttttacatcaGAAAATTCCTGAAGTTGCATCAAGGAAGTCCCAGATGTATGGCTACCTCTGGGAGCAAGAGAAGGGTCTCCAAGCATTGCCAGAGCTTCCTGAGTTCCAATTATCATTACGTCCAGATGACTATGAACTGCCTGAAATTGATCCAGCATGGGATAGTAAAAGCTGGGAATCTCTAGGACAGCCATTGAAAGAGCACCTTAGAGACAGTGATGAGAGTCCAACTGATTGA 1236 0.4426 MGCTYSVYRKKKSSFPEVVVFVPSTRIPVQSDLQRVLKGVIPRDLTDKLTSLRNQIVLVAEDTGGSAIAELRRALNEYLSVLIGLTKKEYGLEGLIEFKWKNLEDGRQDSSIANTWFEVLSAVHLMAMLTLSEADSLMIPKDSSGSGFRVVSSDSKRESIDLLLKASGYLEFCVRDILTRIPAETKKTFPHDLQEGALEAIAIQTLGQGTEIQLGLALESQKATLSVKRRLACEQLIYFSQAYHCLSRCDINQGHGRKHLRFIKWKFLEAKAAAYYYHGLILDKGNEPSSHIGAVSCFLAAEELLAESKKACLSFCLAAPVTRAPPLWGAMKFLHQKIPEVASRKSQMYGYLWEQEKGLQALPELPEFQLSLRPDDYELPEIDPAWDSKSWESLGQPLKEHLRDSDESPTD 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1876 411 Pfam BRO1-like domain 46 309 IPR004328 -
Ssu4g1876 411 PANTHER ENDOSOMAL TARGETING BRO1-LIKE DOMAIN-CONTAINING PROTEIN 1 408 - -
Ssu4g1876 411 MobiDBLite consensus disorder prediction 387 411 - -
Ssu4g1876 411 ProSiteProfiles BRO1 domain profile. 1 411 IPR004328 -
Ssu4g1876 411 CDD BRO1_Alix_like 11 375 - -
Ssu4g1876 411 Gene3D alix/aip1 like domains 32 395 IPR038499 -
Ssu4g1876 411 MobiDBLite consensus disorder prediction 394 411 - -
Ssu4g1876 411 PANTHER UNCHARACTERIZED 1 408 IPR038898 -
Ssu4g1876 411 SMART BRO1_2 19 382 IPR004328 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1876 Ssu-Chr4 34425038 34429129 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1876 - - gsj:114399503 760.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1876 4 34425038 34429129 Ssu4g1876 4 34425038 34429129 ECH