Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1871 atgatgAATTATTTCCCCGACGAGGTAATAGAGCACATATTTGACTATGTGGTGTCACACCGAGACCGGAACGCTTTGTCTTTGGTGTGTAAAAGTTGGTACAGAATAGAGAGGTGTACGAGGCAGAGGGTGTTCATAGGGAACTGTTACTCTATCTCTCCGGAGAGGTTGGTCCAGAGGTTTCCCGGTCTAAAGTCTTTGACTTTGAAGGGAAAGCCTCATTTTGCTGACTTCAGTTTGGTTCCTTATGGTTGGGGTGGCTTTGTGTATCCATGGATTGAGGCACTTGCCAGGGGCAGGGTTGGGTTGGAGGAGCTTAGGCTCAAGAGGATGGTGGTCTCGGATGAGAGCCTGGAGCTACTTTCTCGGTCTTTTCCATACTTTAAGTCTTTGGTTCTTGTTAGCTGTGAAGGGTTCACCACCGATGGCCTTGCTGCTGTAGCTGCAAATTGCAGGTTTCTTAGGGAGCTGGATCTGCAAGAAAATGAAGTTGAAGATCACAAAGGCCAGTGGCTAAGTTGCTTTCCTGATAGCTGTACATCACTTGTCTCTCTTAATTTTGCTTGCCTTAAAGGAGAGGTTAGTTTGGGAGCTCTAGAGAGACTTGTAGCCAGATCTCCTCACCTGAAGAGTTTAAAGCTGAATCGTTCAGTGCCCCTTGATGCACTGCAAAGGATAATGATGCGAGCACCTCAACTAGTGGATTTGGGTGTTGGATCATTTGTCCATGATCCAGAATCAGAGGCCTACATAAAGCTTAAGAATACCATTCTTAAGTGCAAGTCCATAACCAGTTTGGCAGGATTTTTGGAAGTTGCTCCTCCCTGTCTTGCAGCTATATATCCTATTTGCCCCAACTTAACATCCTTAAACTTGAGCTATGCAGCAGGCATTCCTGGCAGTGATTTGATTAAACTAATTCGTCACTGTGTAAAGCTTCAGCGCTTATGGGTAATGGATTGCATTGGAGATGAAGGACTAGGTGTTGTAGCCAAGACATGTAAAGATTTGCAAGAATTGAGGGTTTTTCCATCTATTACCCTTGGAAATCCTGCAGCTGTCACAGAAAAAGGGCTGGTTGCAATATCAATGGGTTGCCCTAAGCTTCACTCATTACTTTATTTCTGTCACCAGATGACAAATGCTGCCCTCATAACAGTGGCTAAGAACTGCCCGAATTTTATCCGCTTTAGGTTGTGTATACTTGATGCAACTAAACCTGACTCTGACACACAGCAGCCACTGGACGAAGGTTTCGGCGCAATTGTGCAGTCTTGCAGGCGACTCAGGCGCCTATCACTCTCGGGGCGATTGACTGACCAGGTTTTCCTTTACATTGGAATGTATGCTGAGCAGCTTGAAATGCTGTCTATTGCATTTGCTGGGGAGAGTGACAAGGGAATGCTCTATGTGTTGAATGGATGCAAGAAGCTTCGGAAGCTTGAGATAAGGGACTGCCCTTTCGGCGACATGGCACTTCTGACGGACGTAGGGAAGTATGAAACAATGCGATCCCTTTGGATGTCGTCCTGCGAAGTGACCGTCGGAGCCTGCAAGTTGCTAGCCAAGAAGATGCCAAGGTTGAATGTGGAGATCTTCAATGAAAATGAGCAAGAAGTTTGTAGTCTGGAAGATGGGCAGAGGGTAGAGAAGATGTATCTGTATCGTACATTGGCTGGGAAAAGGAAAGATGCACCAGAATATgTCAACATGTTCTCCGCTGAAACATGTGTATTTAATATCAGCTCCCTATGTGAGAGAGTAGTTAAGTTGATGAACCCAGCTTCCATGGACACAGCAGAAGGATCCAGTGGAACAACTGTAGACTAG 1830 0.4563 MMNYFPDEVIEHIFDYVVSHRDRNALSLVCKSWYRIERCTRQRVFIGNCYSISPERLVQRFPGLKSLTLKGKPHFADFSLVPYGWGGFVYPWIEALARGRVGLEELRLKRMVVSDESLELLSRSFPYFKSLVLVSCEGFTTDGLAAVAANCRFLRELDLQENEVEDHKGQWLSCFPDSCTSLVSLNFACLKGEVSLGALERLVARSPHLKSLKLNRSVPLDALQRIMMRAPQLVDLGVGSFVHDPESEAYIKLKNTILKCKSITSLAGFLEVAPPCLAAIYPICPNLTSLNLSYAAGIPGSDLIKLIRHCVKLQRLWVMDCIGDEGLGVVAKTCKDLQELRVFPSITLGNPAAVTEKGLVAISMGCPKLHSLLYFCHQMTNAALITVAKNCPNFIRFRLCILDATKPDSDTQQPLDEGFGAIVQSCRRLRRLSLSGRLTDQVFLYIGMYAEQLEMLSIAFAGESDKGMLYVLNGCKKLRKLEIRDCPFGDMALLTDVGKYETMRSLWMSSCEVTVGACKLLAKKMPRLNVEIFNENEQEVCSLEDGQRVEKMYLYRTLAGKRKDAPEYVNMFSAETCVFNISSLCERVVKLMNPASMDTAEGSSGTTVD 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1871 609 SMART LRR_CC_2 125 150 IPR006553 -
Ssu4g1871 609 SMART LRR_CC_2 100 124 IPR006553 -
Ssu4g1871 609 SMART LRR_CC_2 310 333 IPR006553 -
Ssu4g1871 609 SMART LRR_CC_2 284 309 IPR006553 -
Ssu4g1871 609 SMART LRR_CC_2 366 390 IPR006553 -
Ssu4g1871 609 SMART LRR_CC_2 426 449 IPR006553 -
Ssu4g1871 609 SMART LRR_CC_2 475 500 IPR006553 -
Ssu4g1871 609 Pfam Transport inhibitor response 1 protein domain 62 108 IPR041101 -
Ssu4g1871 609 SUPERFAMILY RNI-like 17 532 - -
Ssu4g1871 609 Gene3D - 1 41 - -
Ssu4g1871 609 PANTHER F-BOX/TPR REPEAT PROTEIN POF3 3 571 - -
Ssu4g1871 609 Pfam F-box 3 42 IPR041567 -
Ssu4g1871 609 PANTHER PROTEIN AUXIN SIGNALING F-BOX 3 3 571 - -
Ssu4g1871 609 Gene3D Ribonuclease Inhibitor 42 572 IPR032675 -
Ssu4g1871 609 SMART fbox_2 5 44 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1871 Ssu-Chr4 34288176 34290976 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1871 - - gmx:100812516 1078.16
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1871 4 34288176 34290976 Ssu4g1871 4 34288176 34290976 ECH