Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1860 ATGAGCAGTTGGAGTAGCCTTCTTCTACGAATCGGGGACAAGAGCCCCGAATATGGAGCCTCCTCCGACTACAAAGACCACATTGATACATGCTTTGGCGCCCTTCGCCGCGAGCTCGACCACTCCCAATCCGAGATTTTGGAGTTCCTTTTCGCATGTGCTGAGCAATTGCCTCACAAGATTCCTTTATATGGAACCCTGATTGGCTTAATTAACTTGGAAAATGAGGACTTTGTGAAACAACTAGTGGAGAAAACTCACACTAAATTTCAGgatgCCTTAGATTCTGGAAACTGCAATGGGGTTCGTACTCTAATGCGGCTTTTGACTGTTATGATGTGCAGTAAGGTTCTTCAACCAAACTCTTTGGTGGCTGTCTTCGAAACATTTTTATCATCAGCTGCCACAACAGTAGATGAGGAAAAAGGGAATCCCTTATGGCAGCCATGTGCTGACTTTTACATAACTTGCATTTTATCATGCCTCCCATGGGGTGGAGCAGAACTTATTGAGCAAGTTCCTGAAGATATTGAGAGAGTGATGGTGGGTGTAGAAGCTTACTTGAGCATCAGAAAGCATACATCTGATACTGGTTTATTATTTTTCGAGAATGATGATGAAAACGGGAATGGTCTTAGTGACAAGGATTTTTTGGAAGATTTATGGGATAGAATACAGGTTTTATCAAGCAATGGTTGGAAAGTTGAAAGCgTTCCAAGACCTCATCTTTCATTTGAAGCTCAGCTGGTTGCTGGGAAGTCTCATGAATTTGGGCCAATAAACTGCCCCAGCTTACCAAGCCCGCCTTCAGTCCCTTCTGGCGTGTCTATTGGTAAACAGAAGCATGAAGCAGAATTAAAATACCCTCAAAGGATACACCGGCTAAACATATTTCCTCCCAGTAAAAATGAGGACCTACAGCTTATAGACAGATTTGTTATGGAAGAGTATCTCCTAGATGTGCTTCTGTTCTTAAATGGCTGTCGAAAGGAATGTGCTTCTTTCATGGTTGGCCTGCCAGTTTCCTTCAGATACGAGTACCTCATGGCTGAGACAATATTCTCTCAGCTGCTGATGCTACCACAACCACCTTTCAAACCAGTATATTACACTCTGGTTATTATTGATCTTTGTAAGGCTCTTCCTGGAGCTTTTCCTGCAGTTGTAGCTGGAGCAGTTCGTACTCTCTTTGAGAGGATTGCTGATTTGGATATGGAGTGTCGGACCCGTCTGATCCTTTGGTTCTCACACCATTTATCAAACTTCCAGTTCATCTGGCCATGGGAAGAGTGGGCTTATGTCCTAGACCTCCCAAGGTGGGCTCCGCAGCGTGTCTTTGTACAGGAGGTTTTGGAGAGGGAAGTTCGCTTGTCATACTGGGACAAAGTTAAGCAGAGTATTGAAAATGCACCTGGTTTAGAAGAATTGCTTCCTCCAAAGGGTGGGCCGAACTTTAGTTTTGGTGCAGAAGATGGTAAAGAAAGCAATGAACATGTACTGTCTGGACAGCTCAACAACATGGTTAAAGGAAAGGCACCTGTCCGTGAAATAATCTCATGGATTGATGAAAGTGTGTTTCCAAATAATGGTCTAGAAGTTACCCTCAGAGTGGTTGTACAAACACTTCTCAATATTGGATCCAAGAGTTTCACTCATTTGATGACTGTCTTAGAGAGATATGGGCAAGTCTTTGCAAAAGTATGTCCTGACCAGGATAAGCAAGTCATGCTGATAGCTGAAGTGAGTTCTTTTTGGAAGAGTAACACCCAAATGACAGCAATAGCGATTGACAGGATGATGGGTTATCGACTTGTATCAAATTTGGCTATTGTGAGATGGGTCTTCTTAGCAGAAAATATTGAGCAATTTCATACATCGGATCGTCCATGGGAGATTCTTAGAAATGCAGTAAGCAAGACACACAACCGTATTTCTGATCTAAGGAAAGAAATATTATCTCTTAAAAAGAGTATTTCATCAGCTGAAGAAGCTGCCAAGGAGGCAAAAGCAGAGTTAGACGCTGCAGAGTCAAAACTTACACTGGTGGATGGTGAACCAGTTCTTGGTGACAATCCTGTTAGATTGAATAGATTGAAATCACATGCTGAAAAGACAAAGGAGGAGGTGGTGTCTCTTCAAGATTCTTTAGAAGCTAAGGAAGCTCTTCTTGCCCGAGCAATTGAGGAAAATGAGGCATTATTTCTCTTGTTGTACAAAAGCTTCTCAAATGTGTTGACAGAGCGACTTCCTGAAGGAGCTAGAACACTGCATGAGTTGAAGTCTGCGCAAGTTGATGTGATGACAGTGGACCCTGAAGAGCCATCATCAATGGAATTAGACAATGAGAATCAGAGACCTCAAAACAGTCAGTCAAATGGTGAGAAGAAAGGTGGTGCTTATAACATAGGTGAAAAGGAGCAGTGGTGTATAACCACTTTGGGCTATGTGAAGGCCTTTTCTAGGCAATATGCTGCTGAGATATGGCCCCATATTGAAAAGTTGGATGCAGAGGTATTGACAGAAGATGCACCTTCTCTTTTTCTGTCAGCTGTTTATTCTGGTCTTCGAAGACCAATTCACGAGGCTTGA 2589 0.4272 MSSWSSLLLRIGDKSPEYGASSDYKDHIDTCFGALRRELDHSQSEILEFLFACAEQLPHKIPLYGTLIGLINLENEDFVKQLVEKTHTKFQDALDSGNCNGVRTLMRLLTVMMCSKVLQPNSLVAVFETFLSSAATTVDEEKGNPLWQPCADFYITCILSCLPWGGAELIEQVPEDIERVMVGVEAYLSIRKHTSDTGLLFFENDDENGNGLSDKDFLEDLWDRIQVLSSNGWKVESVPRPHLSFEAQLVAGKSHEFGPINCPSLPSPPSVPSGVSIGKQKHEAELKYPQRIHRLNIFPPSKNEDLQLIDRFVMEEYLLDVLLFLNGCRKECASFMVGLPVSFRYEYLMAETIFSQLLMLPQPPFKPVYYTLVIIDLCKALPGAFPAVVAGAVRTLFERIADLDMECRTRLILWFSHHLSNFQFIWPWEEWAYVLDLPRWAPQRVFVQEVLEREVRLSYWDKVKQSIENAPGLEELLPPKGGPNFSFGAEDGKESNEHVLSGQLNNMVKGKAPVREIISWIDESVFPNNGLEVTLRVVVQTLLNIGSKSFTHLMTVLERYGQVFAKVCPDQDKQVMLIAEVSSFWKSNTQMTAIAIDRMMGYRLVSNLAIVRWVFLAENIEQFHTSDRPWEILRNAVSKTHNRISDLRKEILSLKKSISSAEEAAKEAKAELDAAESKLTLVDGEPVLGDNPVRLNRLKSHAEKTKEEVVSLQDSLEAKEALLARAIEENEALFLLLYKSFSNVLTERLPEGARTLHELKSAQVDVMTVDPEEPSSMELDNENQRPQNSQSNGEKKGGAYNIGEKEQWCITTLGYVKAFSRQYAAEIWPHIEKLDAEVLTEDAPSLFLSAVYSGLRRPIHEA 862
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1860 862 MobiDBLite consensus disorder prediction 780 796 - -
Ssu4g1860 862 Coils Coil 695 729 - -
Ssu4g1860 862 Gene3D - 490 853 - -
Ssu4g1860 862 Gene3D - 299 481 - -
Ssu4g1860 862 Gene3D - 4 269 - -
Ssu4g1860 862 PANTHER CAP BINDING PROTEIN 3 858 IPR027159 GO:0000339|GO:0005846|GO:0006406
Ssu4g1860 862 Pfam MIF4G domain 21 208 IPR003890 GO:0003723|GO:0005515
Ssu4g1860 862 SUPERFAMILY ARM repeat 2 296 IPR016024 -
Ssu4g1860 862 Pfam MIF4G like 343 467 IPR015172 GO:0016070
Ssu4g1860 862 SUPERFAMILY ARM repeat 478 848 IPR016024 -
Ssu4g1860 862 Coils Coil 644 685 - -
Ssu4g1860 862 MobiDBLite consensus disorder prediction 772 799 - -
Ssu4g1860 862 SUPERFAMILY ARM repeat 294 478 IPR016024 -
Ssu4g1860 862 SMART if4_15 8 229 IPR003890 GO:0003723|GO:0005515
Ssu4g1860 862 Pfam MIF4G like 500 826 IPR015174 GO:0016070
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1860 K12882 - gmx:100811738 1592.79