Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1824 atggcttcttcttctctcctCCCAAGGCCACACATTCCCACACCCCTCATCGCCAAACTCACCTCCTCCCCCAGAACCTGGAGCCTCTTCATCCTCGCACACCCTTCACACCCCAAACGCCACAGCAGAAACCTCTTACTCCTCCCCGCCACCCGTGCGGTGTACACCCCAAACCTCTACACCCCTTCTCCACCCTCCGGAGCCGAGCCCCACGGCGACCCCATCTCCGTCCTCAACGAGAGGGTTCGCCGCGACTACGGCAAGAAGGAGGCTTTCCGGACGGTGATGGACTCGGAGGAGGCGGGGAGGTACATGCGGATGGTGAAGGAGCAGCAGCAGAGAGGGCTGCGGAAGCTGAAGGGCGACAGGGAGGGCAAAGGCGGGGTCTTCAGCTGCAAGGTGGACCCTTACGCGCTTCGTTCTGGGGACTACGTTGTGCACAAGAAAGTGGGTGTTGGGAGGTTTGTTGGGATCAGGTTTGACGTTTCGAAGAATTCTTCGCAATCCACCGAGTGTGTTTTCATTGAGTATGCTGACGGCATGGCAAAGCTACCCGTCAACCAGGCTTCTAGAATGCTCTACAGATATAGTCTGCCAAATGAAAGCAAAAAGCCTAGGACATTGAGCAAGTTGAGCGATACCAGTGCGTGGGAGAGAAGAAAGCTTAAGGGGAAGGTTGCAATACAGAAGATGGTTGTGGACTTGATGGAACTCTATCTACACAGGCTCAAACAAAGAAGGCCTCCGTATCCGCAGACTCCTGCCTTGGCTGAATTCGTGGCTCAGTTTCCTTATGAACCCACGCCGGATCAGAAAAAGGCATTTATTGATGTTGAGAGGGATTTGACAGAGCGAGAAACTCCAATGGACAGATTAATTTGTGGAGATGTTGGTTTTGGTAAAACTGAGGTTGCACTACGTGCTATCTTCTGTGTTGTCTCAGCTAAAAAGCAAGCGATGGTTCTGGCACCAACAATAGTTCTAGCAAAACAACATTTTGATGTTATTTCAGAGCGCTTTTCTGTATATCCTGATATTAAGGTTGGACAACTAAGCAGGTTTCAGACCAAAGCAGAGAAAGAAAAGCACTTGGACATGATTAAGAATGGTAGCCTGGATATTATTGTTGGGACTCATTCACTCCTAGGTGACCGTGTTGCATATAACAATCTTGGTCTGCTTGTGGTTGATGAGGAGCAGAGGTTTGGTGTCAAACAGAAGGAGAAGATTGCTTCTTTTAAAACTTCCGTGGATGTACTTACTTTATCTGCAACCCCTATACCACGAACTCTTTATTTAGCATTAACAGGGTTTCGTGATGCTAGTTTAATGTCAACTCCACCTCCAGAAAGAGTTCCTATCAAGACTCACCTTTCTTCATTCAGTGAGGACAAAGTAATATCAGCTATCAAGTATGAGCTGGACCGTGGTGGTcaagttttttatgttctaCCACGTATTAAAGGACTTGATGAAGTAATGGCATTTCTTGTAGAGTCATTTCCAGATGTGGAAATAGCCATTGCCCATGGGAAGCTATACTCAAGGCAATTAGAGGATACCATGGAGAAGTTTGCTCTAGGTGAAATAAAAATCCTTATCTGCACGAATATAGTAGAAAGTGGGCTTGATATTCAAAATGCGAATACCATCATCATTCAGGATGTTCAACAATTTGGCCTTGCACAGTTGTACCAGTTGCGTGGAAGGGTTGGGCGAGCAGATAAGGAAGCACATGCATACTTGTTTTACCCCGATAAAGGCCTACTTTCTGATCAAGCATTGGAGAGGCTTGCTGCTATTGAAGAATGCCGTGAACTTGGTCAAGGCTTCCAACTAGCTGAGAAAGACATGGGTATAAGAGGTTTTGGTGCAATTTTTGGTGAACAGCAATCAGGAGATGTTGGAAATGTTGGTATTGATCTCTTTTTTGAGATGCTCTTCGAGAGCTTGTCCAAGGTTGAAGATCACTGTGTTGTTTCAGTTCCTTATCACTCAGTGCAGgtTGACATAAACATCAATCCTCATCTCCCTTCTGACTACATTAATTATCTGGAGAACCCTatgaaaatagtaaatgaaGCTGAGAGAGTTGCTGAGAAAGACATCTGGAGTCTGATGCAATTTACAGAGAATTTGCGCCGCCAATATGGCAAAGAGCCTCGCTCCATGGAGATTTTACTAAAGAAGCTTTACTTGAGGAGAATGGCAGCAGATTTAGGGATAACCAGAATTTACTCTTCAGGGAAGATGATCTTTATGAAAACAAACATGGGTAAAAAAGTATTCAAGATGATGACAGAGTCCATGGCATCAGATTTACATAGAAATTCATTGGTTCTTGAGGGCAACCAAATTAAGGCAGAACTTCTATTAGAGCTACCAAAAGAACAACTTCTTAATTGGATCTTTCAATGCTTGGCTGAACTTCATGCTTCACTACCCTCCTTCATAAAGTACTAG 2463 0.4462 MASSSLLPRPHIPTPLIAKLTSSPRTWSLFILAHPSHPKRHSRNLLLLPATRAVYTPNLYTPSPPSGAEPHGDPISVLNERVRRDYGKKEAFRTVMDSEEAGRYMRMVKEQQQRGLRKLKGDREGKGGVFSCKVDPYALRSGDYVVHKKVGVGRFVGIRFDVSKNSSQSTECVFIEYADGMAKLPVNQASRMLYRYSLPNESKKPRTLSKLSDTSAWERRKLKGKVAIQKMVVDLMELYLHRLKQRRPPYPQTPALAEFVAQFPYEPTPDQKKAFIDVERDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSAKKQAMVLAPTIVLAKQHFDVISERFSVYPDIKVGQLSRFQTKAEKEKHLDMIKNGSLDIIVGTHSLLGDRVAYNNLGLLVVDEEQRFGVKQKEKIASFKTSVDVLTLSATPIPRTLYLALTGFRDASLMSTPPPERVPIKTHLSSFSEDKVISAIKYELDRGGQVFYVLPRIKGLDEVMAFLVESFPDVEIAIAHGKLYSRQLEDTMEKFALGEIKILICTNIVESGLDIQNANTIIIQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKGLLSDQALERLAAIEECRELGQGFQLAEKDMGIRGFGAIFGEQQSGDVGNVGIDLFFEMLFESLSKVEDHCVVSVPYHSVQVDININPHLPSDYINYLENPMKIVNEAERVAEKDIWSLMQFTENLRRQYGKEPRSMEILLKKLYLRRMAADLGITRIYSSGKMIFMKTNMGKKVFKMMTESMASDLHRNSLVLEGNQIKAELLLELPKEQLLNWIFQCLAELHASLPSFIKY 820
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1824 820 SUPERFAMILY TRCF domain-like 663 810 IPR037235 -
Ssu4g1824 820 Gene3D - 666 813 IPR037235 -
Ssu4g1824 820 SMART CarD_TRCF_2 138 240 IPR003711 -
Ssu4g1824 820 Pfam TRCF domain 672 757 IPR005118 GO:0006281
Ssu4g1824 820 Pfam Helicase conserved C-terminal domain 468 574 IPR001650 -
Ssu4g1824 820 SUPERFAMILY CarD-like 134 201 IPR036101 -
Ssu4g1824 820 CDD DEXHc_TRCF 253 446 - -
Ssu4g1824 820 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 282 444 IPR014001 -
Ssu4g1824 820 PANTHER TRANSCRIPTION-REPAIR-COUPLING FACTOR 13 791 - -
Ssu4g1824 820 Pfam DEAD/DEAH box helicase 289 427 IPR011545 GO:0003676|GO:0005524
Ssu4g1824 820 SMART ultradead3 263 455 IPR014001 -
Ssu4g1824 820 Gene3D - 139 653 IPR027417 -
Ssu4g1824 820 PANTHER FANCONI ANEMIA GROUP M FANCM FAMILY MEMBER 13 791 - -
Ssu4g1824 820 SMART helicmild6 491 575 IPR001650 -
Ssu4g1824 820 Gene3D - 142 202 - -
Ssu4g1824 820 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 316 588 IPR027417 -
Ssu4g1824 820 Gene3D - 203 446 IPR027417 -
Ssu4g1824 820 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 453 619 IPR001650 -
Ssu4g1824 820 Pfam CarD-like/TRCF domain 139 239 IPR003711 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1824 Ssu-Chr4 33149260 33165375 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1824 - - gmx:100805206 1467.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1824 4 33149260 33165375 Ssu4g1824 4 33149260 33165375 ECH