Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1821 ATGCCACCATCCACCGTGGCTTCACCGCCACCGGCGTTAGATGAGGAGCCGTTACCTCACGACGGTAACGGTTACGACGTAAACGACGACGGCGCTTCGTTCAGCGTCGTTTCACTGGACGACGAGGGTTTCCCGTCACAACTCCCGGGATCGGAAACGGCGTCGGAAAAGATCAGTTTCGCCGCCGATTTCTATCGCTGCGGAACCGATTGGTCCTCGCTGTTGTCGTCGAAAGATCGCAGACACAGCGATTTCGAGCGAGATTCGGGGAAGAAGCTGAAGCAGACCAACCTGTTCCAGATTTGGGGATTCAAAAAAAACGAGGCCGTTGGTTCAGTTGAATGTGGATCCAATCAGAGTGGTTATTGTGCTGACGGAGGTGCTTCTTCTGAGAGGAAGATTGTGAAATCAGGAAATTGGGGTTCCATTTTGCGCGACAATGGGAAAGAGTTTGAGAACACAAAATCTTCTCCCAAGAGAAAGGGTTTCAGTGGTGAAAATAGGGTTACACGTTCCTGTCCCTTTTATAAGAAAATCCCAGGGACAAAGTTCACTGTTGATGCTTTTCGTTATGGGTGTGTTGAAGGGTGCTCGGCGTATTTTCTTACTCATTTCCATTGCGATCACTATGGTGGCCTTAGCAAGAAATGGTTACATGGCCCTATATATTGCTCTCCTCTCACGGCACGGCTCGTTCAAATGTGTCTCTCGGTAAATCCTTTGTATATCCACCCTTTGGAATTTAATACTGGACATGTGATTGATGGTGTCAAAGTGACTTTGTTAGAAGCTAATCATTGCCCTGGTGCAGCTTTGATTCACTTTGACCTCCCAAATGCCCAACGCTATTTGCACACTGGGGACTTTAGAGCGTGTAAACCAATGCAGTCTTACCATCTTCTTGTAAGTCAACGTGTGAATGTACTTTATTTGGATACCACATATTGCAACCAAAAATACAGGTTCCCTTCCAAGGAAGATGTACTCGATTATGTTGTCAAAATTGCAAAGAACCACCTCAAACTGCATCCCAGAACTTTAGTGGTTGTTGGGGCATACAGTATTGGCAAAGAATGCGTATATCTTGCAATTTCTAAGGCACTTGGGGTGAAAATTTATGCGAATGCTTCAAGAAGACGGATTTTGCTAGCTTTTGGTTGGCCCAACCTTTCAGATAGTCTCTGTACAAACGGAAATAACACACTTCTCCATGTTCTGCCCATGTCATCTTTGAGACTTGAGACCTTAAAGGATTACTTGAAGACCTACAAGGAGCAATTCACAGCAGTTTTGGCGTTTCGTCCTACAGGTTGGACTTTCAGCGAGAAGATACGCAACGATCTGGAACTAATTAAACCTGTTTCCAAAGGAAATATCACGATATATGGAGTTCCCTACAGTGAGCATTCCAGCTTCACAGAACTGCGAGATTTTGTTCAGTTTTTGAGGCCTGACAAAATAGTTCCAACTGTGAATGTCGGGAATGCTGCTAATCGAGAAAAGATGCAATCCTACTTCCGAGACTGGTTGATGGGCTAA 1539 0.4535 MPPSTVASPPPALDEEPLPHDGNGYDVNDDGASFSVVSLDDEGFPSQLPGSETASEKISFAADFYRCGTDWSSLLSSKDRRHSDFERDSGKKLKQTNLFQIWGFKKNEAVGSVECGSNQSGYCADGGASSERKIVKSGNWGSILRDNGKEFENTKSSPKRKGFSGENRVTRSCPFYKKIPGTKFTVDAFRYGCVEGCSAYFLTHFHCDHYGGLSKKWLHGPIYCSPLTARLVQMCLSVNPLYIHPLEFNTGHVIDGVKVTLLEANHCPGAALIHFDLPNAQRYLHTGDFRACKPMQSYHLLVSQRVNVLYLDTTYCNQKYRFPSKEDVLDYVVKIAKNHLKLHPRTLVVVGAYSIGKECVYLAISKALGVKIYANASRRRILLAFGWPNLSDSLCTNGNNTLLHVLPMSSLRLETLKDYLKTYKEQFTAVLAFRPTGWTFSEKIRNDLELIKPVSKGNITIYGVPYSEHSSFTELRDFVQFLRPDKIVPTVNVGNAANREKMQSYFRDWLMG 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1821 512 Gene3D - 179 491 IPR036866 -
Ssu4g1821 512 Pfam DNA repair metallo-beta-lactamase 390 495 IPR011084 -
Ssu4g1821 512 MobiDBLite consensus disorder prediction 1 32 - -
Ssu4g1821 512 MobiDBLite consensus disorder prediction 1 16 - -
Ssu4g1821 512 CDD SNM1A-1C-like_MBL-fold 167 317 - -
Ssu4g1821 512 Gene3D - 321 469 - -
Ssu4g1821 512 PANTHER DNA CROSS-LINK REPAIR PROTEIN SNM1 76 510 - -
Ssu4g1821 512 PANTHER DNA CROSS-LINK REPAIR PROTEIN PSO2/SNM1-RELATED 76 510 - -
Ssu4g1821 512 SUPERFAMILY Metallo-hydrolase/oxidoreductase 195 505 IPR036866 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1821 Ssu-Chr4 33107684 33111834 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1821 K15340 - gmx:100790844 883.248