Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1816 ATGGGTTCTTCTTTGTGGACTTTGCCTCTAATTTTGGCGTCACTAGCCTCTGCCGCACTCTGCGCCACCCCACCGAGGCCAGTGGATGTTCCATTCGGCCGAAACTACGTTCCCACTTGGGCTTATGATCACATCAAATACTTCAACGGAGGTTCTGAGATTCAACTTCTTCTTGACAAGTACACTGGTACTGGCTTCCAGTCCAAAGGATCATACTTGTTTGGTCACTTCAGCATGTACATAAAGATGGTTCCTGGCGATTCAGCTGGCACAGTCGCTGCTTTTTACTTATCTTCTCAAAATGCGGAGCACGATGAGATAGATTTTGAGTTCTTAGGAAACAGAACAGGACAACCTTACATTTTGCAAACAAATGTGTTCACCGGAGGCAAGGGTGACAGAGAGCAAAGAATCTATCTCTGGTTTGATCCCACAAAAGCCTACCACAGATACTCTGTACTGTGGAACATGTATCAAATTGTGTTCCTAGTGGATAACGTCCCAATCAGGGTGTTCAAGAACAACAAGGACTTGGGAGTGAAATTCCCCTTCGAACAACCCATGAAGGTGTACAACAGCTTGTGGAATGCTGATGACTGGGCCACAAGGGGTGGTTTGGAAAAAACAGATTGGTCCAAAGCTCCTTTCACAGCAGCCTACAAGGGGTTCCACATCGATGGGTGTGAGACCTCGGTGAATGCCAGGTTCTGTGCCACACAGGGCAAGAGATGGTGGGATCAGGCAGAGTTTCGTGACCTTGATGCTGCTCAATGGCGAAGACTCAGGTGGGTGCGCAAGAAGAACACCATCTACAACTACTGCACTGACAGGAGCCGCTACCCTCAACTTCCCCCTGAATGCAGAATGGATGTTCAATTTGGCCGAAACTACGTGCCCACTTGGGCCTTTGATCACATCAAATACTTCAATGGAGGTTCTGAGATTCAGCTTCATCTTGACAAGTACACTGGTACTGGCTTCCAGTCCAAGGGGTCTTACTTGTTTGGTCACTTCAGCATGTACATAAAAATGGTTCCTGGCGATTCAGCTGGCACTGTCACTGCTTTCTATTTATCTTCCCAAACTGCGGAGCACGACGAGATAGACTTTGAGTTCTTGGGGAACAGAACCGGACAACCTTACATTTTGCAAACAAATGTTTTCACCGGAGGCAAAGGGGACCGAGAACAGAGAATCTACCTCTGGTTCGATCCTACATTAGCCTACCACAGATACTCTATTCTCTGGAACATGTATCAGATTGTATTCTATGTGGACGATGTGCCAATCAGGGTGTTCAAGAACTGCAAGGACTTGGGAGTGAAATTCCCGTTTTTCCAGCCCATGAAGATATACAACAGTTTGTGGAACGCTGATGACTGGGCCACAAGGGGTGGTTTGGAGAAAACGGATTGGTCCAAAGCGCCTTTCATAGCAACCTACAAAGGGTTCCACATCGACGGGTGCGAAGCCTCTGTGAACGCCAGGTTCTGTGCCACACAGGGCAAGAGTTGGTGGGATCAACCAGAGTTCCGCGACCTCGACGCTGCTCAATGGCGAAGACTCAGATGGGTGCGCCAGAAGTACACCATCTACAACTACTGCACTGACAGAAAGCGCTACCCTCAACTCCCTCCTGAGTGCAGAAGAGACCGTGACATTTAA 1665 0.4829 MGSSLWTLPLILASLASAALCATPPRPVDVPFGRNYVPTWAYDHIKYFNGGSEIQLLLDKYTGTGFQSKGSYLFGHFSMYIKMVPGDSAGTVAAFYLSSQNAEHDEIDFEFLGNRTGQPYILQTNVFTGGKGDREQRIYLWFDPTKAYHRYSVLWNMYQIVFLVDNVPIRVFKNNKDLGVKFPFEQPMKVYNSLWNADDWATRGGLEKTDWSKAPFTAAYKGFHIDGCETSVNARFCATQGKRWWDQAEFRDLDAAQWRRLRWVRKKNTIYNYCTDRSRYPQLPPECRMDVQFGRNYVPTWAFDHIKYFNGGSEIQLHLDKYTGTGFQSKGSYLFGHFSMYIKMVPGDSAGTVTAFYLSSQTAEHDEIDFEFLGNRTGQPYILQTNVFTGGKGDREQRIYLWFDPTLAYHRYSILWNMYQIVFYVDDVPIRVFKNCKDLGVKFPFFQPMKIYNSLWNADDWATRGGLEKTDWSKAPFIATYKGFHIDGCEASVNARFCATQGKSWWDQPEFRDLDAAQWRRLRWVRQKYTIYNYCTDRKRYPQLPPECRRDRDI 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1816 554 ProSitePatterns Glycosyl hydrolases family 16 active sites. 106 116 IPR008263 GO:0004553|GO:0005975
Ssu4g1816 554 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 2 287 IPR044791 GO:0004553
Ssu4g1816 554 CDD GH16_XET 27 287 IPR016455 GO:0010411|GO:0016762|GO:0042546
Ssu4g1816 554 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 19 220 IPR000757 GO:0004553|GO:0005975
Ssu4g1816 554 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 278 481 IPR000757 GO:0004553|GO:0005975
Ssu4g1816 554 Pfam Glycosyl hydrolases family 16 294 474 IPR000757 GO:0004553|GO:0005975
Ssu4g1816 554 Pfam Glycosyl hydrolases family 16 33 213 IPR000757 GO:0004553|GO:0005975
Ssu4g1816 554 Gene3D - 291 554 - -
Ssu4g1816 554 Gene3D - 18 290 - -
Ssu4g1816 554 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 289 552 - -
Ssu4g1816 554 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 2 287 - -
Ssu4g1816 554 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 289 552 IPR044791 GO:0004553
Ssu4g1816 554 SUPERFAMILY Concanavalin A-like lectins/glucanases 29 290 IPR013320 -
Ssu4g1816 554 ProSitePatterns Glycosyl hydrolases family 16 active sites. 367 377 IPR008263 GO:0004553|GO:0005975
Ssu4g1816 554 SUPERFAMILY Concanavalin A-like lectins/glucanases 292 552 IPR013320 -
Ssu4g1816 554 CDD GH16_XET 290 548 IPR016455 GO:0010411|GO:0016762|GO:0042546
Ssu4g1816 554 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 240 287 IPR010713 GO:0005618|GO:0006073|GO:0016762|GO:0048046
Ssu4g1816 554 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 501 548 IPR010713 GO:0005618|GO:0006073|GO:0016762|GO:0048046
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1816 Ssu-Chr4 32994922 33002216 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1816 283 554 Glycoside Hydrolase AT5G13870 81.618 2.67e-171 484
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1816 K08235 - gmx:100779122 559.296