LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ssu4g1815	ATGGCTTCGGCTACTCTCTCTGTAGCCAAACCAGCTCTTCAGGCAAATGGGAAAGGCTTCTCTGAGTTCTCTGGCCTCCGCAGCTCATCAGGCTACCTTCCCTTTTCTAGAAAATCTTCAGAGGCTTTCCATTCTGTCATTGCCTTCCAGACCTATGCAGTTGGAAGCAGTGGAGGATACAAGAAAGGTGTAGTAGAAGCAAAACTGAAGGTTGCCATAAACGGGTTTGGAAGGATTGGAAGGAACTTCTTGAGGTGCTGGCACGGTCGTAAAGACTCCCCTCTTGATGTCATTGCCATCAACGACACCGGAGGCGTAAAACAAGCTTCTCACCTTCTCAAGTACGACTCCACCCTTGGAATCTTCGACGCTGACGTCAAGCCTGTGGGTAATGATGCCATCTCCGTTGATGGAAAGGTCATCAAAGTTGTCTCTAACCGCAACCCTGCCAACCTTCCTTGGAAGGATTTGGGCATAGACTTGGTGATTGAAGGAACTGGAGTGTTCGTGGACAAAGAAGGTGCAGGAAAACACATTCAAGCAGGAGCTAAGAAGGTGCTCATCACAGCCCCCGGCAAAGGAGACATCCCCACCTATGTGGTTGGTGTAAACGCTGATGCTTACAAACCAGATGAACCCATCATCAGCAATGCCTCTTGCACCACTAACTGCCTTGCACCCTTTGTCAAGGTCCTTGATCAGAAATTCGGTATCATCAAGGGTACCATGACTACCACTCACTCCTACACTGGTGACCAAAGGCTTCTTGATGCGAGCCACCGTGACCTGAGGCGTGCAAGAGCAGCAGCCCTCAACATTGTCCCCACTTCAACAGGAGCAGCAAAGGCAGTGGCCCTTGTGCTCCCAACCCTCAAAGGCAAACTCAATGGCATTGCACTCCGTGTGCCAACACCAAACGTGTCAGTGGTGGACCTTGTGGTTCAGGTCTCAAAGAAGACCTTCGCAGAAGAAGTGAATGCAGCCTTCAGAGAGAGTGCAGAGAAGGAGCTCACGGGAATTCTCTCGGTCTGTGATGAGCCCCTTGTGTCTGTTGATTTCAGGTGCACTGACGTGTCCTCAACTGTTGACTCGTCGTTGACCATGGTCATGGGAGATGACATGGTCAAGGTGATTGCTTGGTATGACAACGAGTGGGGCTACTCCCAAAGGGTTGTGGATTTGGCTGACATTGTTGCCAACAACTGGAAGTGA	1212	0.505	MASATLSVAKPALQANGKGFSEFSGLRSSSGYLPFSRKSSEAFHSVIAFQTYAVGSSGGYKKGVVEAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVIAINDTGGVKQASHLLKYDSTLGIFDADVKPVGNDAISVDGKVIKVVSNRNPANLPWKDLGIDLVIEGTGVFVDKEGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALVLPTLKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESAEKELTGILSVCDEPLVSVDFRCTDVSSTVDSSLTMVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK	403

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ssu4g1815	403	Pfam	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain	70	171	IPR020828	GO:0051287
	Ssu4g1815	403	SUPERFAMILY	NAD(P)-binding Rossmann-fold domains	68	236	IPR036291	-
	Ssu4g1815	403	PANTHER	GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE	1	403	-	-
	Ssu4g1815	403	SMART	gp_dh_n_7	69	220	IPR020828	GO:0051287
	Ssu4g1815	403	SUPERFAMILY	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain	220	382	-	-
	Ssu4g1815	403	Gene3D	-	70	395	-	-
	Ssu4g1815	403	Pfam	Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain	225	381	IPR020829	GO:0016620
	Ssu4g1815	403	ProSitePatterns	Glyceraldehyde 3-phosphate dehydrogenase active site.	218	225	IPR020830	GO:0016620
	Ssu4g1815	403	TIGRFAM	GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I	70	393	IPR006424	GO:0006006\|GO:0016620\|GO:0050661\|GO:0051287
	Ssu4g1815	403	PANTHER	GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE 2	1	403	IPR020831	GO:0016620
	Ssu4g1815	403	Gene3D	Dihydrodipicolinate Reductase; domain 2	219	383	-	-
	Ssu4g1815	403	PRINTS	Glyceraldehyde-3-phosphate dehydrogenase signature	214	232	IPR020831	GO:0016620
	Ssu4g1815	403	PRINTS	Glyceraldehyde-3-phosphate dehydrogenase signature	337	352	IPR020831	GO:0016620
	Ssu4g1815	403	PRINTS	Glyceraldehyde-3-phosphate dehydrogenase signature	241	257	IPR020831	GO:0016620
	Ssu4g1815	403	PRINTS	Glyceraldehyde-3-phosphate dehydrogenase signature	178	191	IPR020831	GO:0016620
	Ssu4g1815	403	PRINTS	Glyceraldehyde-3-phosphate dehydrogenase signature	297	314	IPR020831	GO:0016620

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ssu4g1815	Ssu-Chr4	32977515	32980137	Dispersed/Transposed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ssu4g1815	K05298		-	gmx:100815649	709.138

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Ssu4g1815	4	32977515	32980137	Ssu4g1815	4	32977515	32980137	ECH