Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1813 ATGGGCGCGAGCAGCGACCCGACCCAGGACGGGTCGGACGAGCAGCAGAAGCGTTCGGAGATCTACACGTACGAGGCTCCGTGGCACATCTACGCCATGAACTGGAGCGTCCGGCGCGACAAGAAGTACCGGCTGGCCATCGCGTCGCTCCTGGAGCAGTACCCGAACCGCGTGGAGATCGTCCAGCTGGACGACTCCAACGGCGAGATCCGCTCGGACCCGAGCCTCTCCTTCGAGCACCCCTACCCTCCCACCAAGGCCATCTTCGTCCCGGACAAGGACTGCCACCGCCCGGACCTCCTCGCCACCTCCTCCGACTTCCTCCGCGTCTGGAGCATCTCCGACCCCGACGCCGACTCCCACCCCTCCCCCCGCGTCGAGCTCAAGTCCCTCCTCAACGGCAACAAGAACAGCGAGTACTGCGGGCCCCTCACCTCCTTCGACTGGAACGAGGCGGAGCCCAGGCGCATCGGCACCTCCAGCATCGACACCACCTGCACCATCTGGGACATCGAGAAGGAAACCGTCGACACCCAGCTCATCGCGCACGACAAGGAGGTCTACGACATCGCCTGGGGCGGGGTCGGCGTCTTCGCCTCCGTCTCCGCCGACGGCTCCGTTAGGGTTTTCGACCTCCGCGACAAGGAGCACTCCACGATAATCTACGAGAGCTCCGAGCCCGACACGCCCTTGGTTCGCCTCGGCTGGAACAAGCAGGACCCCCGCTACATGGCCACCATTATTATGGACAGCGCGAAGGTCGTGGTGCTCGACATTCGCTTCCCCACGCTCCCCGTCGTGGAGCTGCAGCGGCACCAGGCGAGCGTGAACGCGATTGCCTGGGCGCCGCATAGCTCCTGCCACATATGCACCGCGGGGGATGATTCCCAGGCCCTGATTTGGGACCTCTCCTCGATGGGCCAGCCCGTGGAGGGTGGGCTTGACCCCATTCTTGCCTACACCGCTGGCGCCGAGATTGAGCAGCTTCAGTGGTCGTCTTCGCAGCCCGATTGGGTCGCCATTGCCTTCTCCACTAAGCTTCAGATTCTTAGGATATGA 1059 0.6421 MGASSDPTQDGSDEQQKRSEIYTYEAPWHIYAMNWSVRRDKKYRLAIASLLEQYPNRVEIVQLDDSNGEIRSDPSLSFEHPYPPTKAIFVPDKDCHRPDLLATSSDFLRVWSISDPDADSHPSPRVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEKETVDTQLIAHDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRI 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1813 352 Pfam WD domain, G-beta repeat 269 302 IPR001680 GO:0005515
Ssu4g1813 352 Pfam WD domain, G-beta repeat 180 211 IPR001680 GO:0005515
Ssu4g1813 352 PANTHER WD REPEAT CONTAINING PROTEIN 13 352 IPR045159 -
Ssu4g1813 352 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 269 305 - -
Ssu4g1813 352 ProSiteProfiles Trp-Asp (WD) repeats profile. 269 305 IPR001680 GO:0005515
Ssu4g1813 352 SMART WD40_4 262 302 IPR001680 GO:0005515
Ssu4g1813 352 SMART WD40_4 71 112 IPR001680 GO:0005515
Ssu4g1813 352 SMART WD40_4 173 211 IPR001680 GO:0005515
Ssu4g1813 352 SMART WD40_4 125 170 IPR001680 GO:0005515
Ssu4g1813 352 SUPERFAMILY WD40 repeat-like 47 310 IPR036322 GO:0005515
Ssu4g1813 352 ProSitePatterns Trp-Asp (WD) repeats signature. 289 303 IPR019775 -
Ssu4g1813 352 Gene3D - 10 351 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1813 Ssu-Chr4 32959324 32963370 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1813 K11805 - gmx:100818850 689.493
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1813 4 32959324 32963370 Ssu4g1813 4 32959324 32963370 ECH