Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Ssu4g1812 | ATGAAGGTGGCATGTTGTCGCACAGACATTAATATCCCGTACTTGGGAACCCCAGGAACAAGGTTTGGTTCTCAGGAAGCCCTTGTCTTTCTTCAAAAATGTAGCAATTTCAAGCAGCTCAAGCAAGTCCATGGCAGAATAATCCGTTTTGGTCTCACCTATGACCAATTGCTTATCAGGAAGCTAATTCAGCTCTCTTCATCTTATGGCAAAATGAACTATGCCACTCTGGTATTTGATCAACTCAATGCCCCAGATACCTTCACCTGGAATGTCATGATTAGAGCTTATACCATTAGTGGTTCTCCCAATATGGCCCTTCTTTTGTTCAAGGTCATGCTATGCGAGGGCTTTGCACCTGACAAGTTTACATACCCTTTTGTGATCAATGCTTGCATGGCCTCTTCTGCCTTTGATTTAGGAAGAGTAGCCCATGCTCTGGCAATGAAAATGGGATTTTGGGGTGACCTCTATGTGCAGAACACCATGATGAATCTCTACTTCAAGTGTGAGAATGTAGATGGTGGGTGGAAGGTGTTTGATAAAATGCGTGTCCGCAACGTGTTCGCATGGACCACCGTGATTGCTGGGCTTGTTGCTTGCGGGAAATTGGACGCTGCGCGCAAGTTATTTGAGCAGATGCcttctaaaaatgttgtttcatGGACTGCAATGATTGATGGGTATGTGAAACACAAGCAACCCGTTGaagcttttaatttgtttgaaagAATGCAGGTTGATGATGTGAGGCCAAATCAGTACACTGTGGTGAGCTTGGTCAGAGCTTGTACTGAGATGGGTAGCCTCAAGTTGGGTAGAAGGATTCATGATTTTGCTCTCAAGAATGGTTTTGAGCTTGGGCCATTCTTGGGTACCGCGCTTATAGACATGTACAGCAAGTGTGGCAGTTTAGATGATGCAAGGAAAGTGTTTGATATGATGCAGGTGAGAACCTTGGCTACTTGGAATACAATGATCACTAGCTTGGGTGTGCATGGGTTTAGAAATGAAGCCATATCCCTTTTTGAAGAAATGGAGAAGGCAAATGTAGTTCCGGATGCTATCACTTTTGTAGGTGTTCTCAGTGCTTGCGGTTATATGAATGACCTGGAACTAGCCCAAAAGTATTTCAATCTTATGACAGATCGTTATGGTATAACACCTATCTTGGTACACTATGCATGCATGGTTGAAATATATACTCGTGCTAATAAGTTGGATGAGATTTACAGGTTAGGGAATACAATGGAAGCAAATCATGATGTTGCAGAATTGCTCCAGAAGAGAAAACTCACTAGAATCGATgacataaaaaaacttatacacAAGCCATACGGGGATTTGGATTTCTTAGAACTAGTTTTAGATCACTCCTCCACGAGCTCTCCACCTCAACTCCAGAGCTCAAGTGGGATGCAGATTGATATcaaccaaacaaataaataa | 1449 | 0.412 | MKVACCRTDINIPYLGTPGTRFGSQEALVFLQKCSNFKQLKQVHGRIIRFGLTYDQLLIRKLIQLSSSYGKMNYATLVFDQLNAPDTFTWNVMIRAYTISGSPNMALLLFKVMLCEGFAPDKFTYPFVINACMASSAFDLGRVAHALAMKMGFWGDLYVQNTMMNLYFKCENVDGGWKVFDKMRVRNVFAWTTVIAGLVACGKLDAARKLFEQMPSKNVVSWTAMIDGYVKHKQPVEAFNLFERMQVDDVRPNQYTVVSLVRACTEMGSLKLGRRIHDFALKNGFELGPFLGTALIDMYSKCGSLDDARKVFDMMQVRTLATWNTMITSLGVHGFRNEAISLFEEMEKANVVPDAITFVGVLSACGYMNDLELAQKYFNLMTDRYGITPILVHYACMVEIYTRANKLDEIYRLGNTMEANHDVAELLQKRKLTRIDDIKKLIHKPYGDLDFLELVLDHSSTSSPPQLQSSSGMQIDINQTNK | 482 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Ssu4g1812 | 482 | Pfam | PPR repeat family | 217 | 264 | IPR002885 | - | |
| Ssu4g1812 | 482 | Pfam | PPR repeat family | 321 | 365 | IPR002885 | - | |
| Ssu4g1812 | 482 | Pfam | PPR repeat family | 85 | 132 | IPR002885 | - | |
| Ssu4g1812 | 482 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 86 | 120 | IPR002885 | - | |
| Ssu4g1812 | 482 | SUPERFAMILY | TPR-like | 183 | 348 | IPR011990 | GO:0005515 | |
| Ssu4g1812 | 482 | Gene3D | Tetratricopeptide repeat domain | 281 | 351 | IPR011990 | GO:0005515 | |
| Ssu4g1812 | 482 | Gene3D | Tetratricopeptide repeat domain | 140 | 278 | IPR011990 | GO:0005515 | |
| Ssu4g1812 | 482 | Gene3D | Tetratricopeptide repeat domain | 358 | 424 | IPR011990 | GO:0005515 | |
| Ssu4g1812 | 482 | Gene3D | Tetratricopeptide repeat domain | 20 | 139 | IPR011990 | GO:0005515 | |
| Ssu4g1812 | 482 | PANTHER | BNAA06G32750D PROTEIN | 20 | 436 | - | - | |
| Ssu4g1812 | 482 | TIGRFAM | PPR: pentatricopeptide repeat domain | 88 | 121 | IPR002885 | - | |
| Ssu4g1812 | 482 | TIGRFAM | PPR: pentatricopeptide repeat domain | 159 | 188 | IPR002885 | - | |
| Ssu4g1812 | 482 | TIGRFAM | PPR: pentatricopeptide repeat domain | 293 | 317 | IPR002885 | - | |
| Ssu4g1812 | 482 | TIGRFAM | PPR: pentatricopeptide repeat domain | 190 | 220 | IPR002885 | - | |
| Ssu4g1812 | 482 | TIGRFAM | PPR: pentatricopeptide repeat domain | 220 | 253 | IPR002885 | - | |
| Ssu4g1812 | 482 | TIGRFAM | PPR: pentatricopeptide repeat domain | 322 | 355 | IPR002885 | - | |
| Ssu4g1812 | 482 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 218 | 252 | IPR002885 | - | |
| Ssu4g1812 | 482 | PANTHER | PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN | 20 | 436 | - | - | |
| Ssu4g1812 | 482 | MobiDBLite | consensus disorder prediction | 462 | 482 | - | - | |
| Ssu4g1812 | 482 | Pfam | PPR repeat | 161 | 188 | IPR002885 | - | |
| Ssu4g1812 | 482 | Pfam | PPR repeat | 293 | 317 | IPR002885 | - | |
| Ssu4g1812 | 482 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 187 | 217 | IPR002885 | - | |
| Ssu4g1812 | 482 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 319 | 353 | IPR002885 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Ssu4g1812 | Ssu-Chr4 | 32951316 | 32952764 | Proximal |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Ssu4g1812 | 34 | 423 | Glycoside Hydrolase | AT3G49170 | 27.778 | 3.24e-49 | 179 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Ssu4g1812 | - | - | gmx:100789790 | 845.499 |