Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1810 ATGGCTTCTAATTGCAGGACCAACAATTTCCTGCGCCACGCGGAATCAATGAAGCTTCTGCCATCAGGTGCTGGCCACATTTCACACTTAAACGCTGTGATACTTGGTGAATCTCTCGCCACTGAAGAGGATGATTTCGTTCTTCCAAATGAGGACTTTGCTGACCAAGCCAATGTTCAGTCCCCGGAACAGTATCTGAAGATGTATAAGAGATCGATTGAGGACCCTGCTGGATTCTGGTCCGAGATTGCCTCAGAATTCTATTGGAAACAGAGGTGGGGGAATAAAGTGtgtgaagaaaattttgatgtTAGGAAAGGGAATATCAAGATTGAGTGGTTCAAAGGTGGCATCACCAACGTCTGTTACAATTGCTTGGATAGAAATGTTGAAGCTGGACTTGGTGACAAGGTTGCCATTTACTGGGAAGGCAATGAGCCTGGTTTGGATGGTACTTTGACATACACTCAGCTTCTCCATCAAGTTTGCCAGcTTGCAAACTACCTGAAAGATATTGGTGTGAAGAATGGAGATgctgtaattatttatttgcctATGCTTATGGAGCTTCCCATCGCAATGCTTGCCTGTGCCCGCATTGGTGCTGTTCATTCGgttGTATTTGCTGGTTATTCTGCAGAAGCTCTTGCCCAGAGAATCATTGATTGTAAACCAAAGTTGGGCTCTAAGGCTATCCATCTGAAAGATATTGTTGATGCTGCAATCAATGATTCAGCCCAAAATGGGGTCTCCATAGATGTATGCCTAGTTTATGAAAACCAATGGGCAATGAAGAGGGTAGATACCAAATGGAAGGAAGGGCGTGATATATGGTGGCAGGATGTCATTCCTCAATATCCAACTACTTGTCCGGTGGAGTGGGTTGATGCAGAGGATCCACTTTTTCTACTCTATACAAGTGGGAGTACAGGAAAACCTAAGGGTGTCCTCCATACAACTGGTGGTTACATGGTGTACACTGCAACAACATTCAAGTATGCATTTGACTACAAGCCGTCTGACATCTACTGGTGTACAGCTGATTGTGGTTGGATTACTGGGCACAGCTATGTCACTTATGGACCCATGCTCAATGGTGCATCTGTTATTGTGTATGAAGGgGCTCCTAATTATCCTGATGCTGGGCGATGTTGGGACATTGTTGACAAATATAAAGTGACAATATTCTACACTGCCCCCACACTGGTGCGGTCCCTCATGCGTGATGGTGATGCTTTTGTTACTCGCTACTCAAGGAAATCTTTACGAGTCCTAGGAAGTGTAGGCGAGCCCATAAATCCAAGTGCATGGAGGTGGTTTTACAATGTAGTTGGAGATTCAAGGTGCCCTATCTCTGACACTTGGTGGCAAACAGAAACTGGTGGCTTCATGATAACTCCACTACCAGGTGCTTGGCCCCAGAAACCTGGTTCTGCAACTTTCCCTTTCTTTGGAGTTCAGCCTGTCATAGTGGATGAGAAAGGTGTTGAAATAGAAGGTGAGTGCAGTGGATATCTATGTGTTAAGAAATCATGGCCTGGGGCATTCAGAACTCTGTATGGTGATCATGAAAGATATGAAACAACATATTTCAAGCCATTTGCGGGATACTATTTTAGTGGTGATGGTTGCAGCAGGGATAAAGATGGATACCACTGGCTCACTGGAAGAGTTGATGATGTCATCAATGTCagTGGGCATCGAATTGGCACGGCAGAAGTGGAATCAGCTATAGTTTCACATCCTCAATGTGCAGAGGCTGCCGTGGTCGGTGTGGAGCATGAGGTCAAAGGACAGGGTATCTATGCATTTGTTACAGTTGTGGATGGTGTTCCTTACAGTGAAGAACTGCGGAAGGACCTCATACTCACAGTTCGAAAGCAGATAGGAGCCTTTGCAGCACCTGACAAAATCCATTGGGCACCTGGCCTCCCAAAAACAAGGAGTGGCAAGATAATGCGAAGAATTCTGAGAAAAATTGCTTCCAGGCAGCTGGATGAACTTGGAGATACAAGTACCCTTGCAGATCCAAATGTGGTCAATCAACTTATAGAACTTGCAGATTCTTGA 2070 0.4425 MASNCRTNNFLRHAESMKLLPSGAGHISHLNAVILGESLATEEDDFVLPNEDFADQANVQSPEQYLKMYKRSIEDPAGFWSEIASEFYWKQRWGNKVCEENFDVRKGNIKIEWFKGGITNVCYNCLDRNVEAGLGDKVAIYWEGNEPGLDGTLTYTQLLHQVCQLANYLKDIGVKNGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGYSAEALAQRIIDCKPKLGSKAIHLKDIVDAAINDSAQNGVSIDVCLVYENQWAMKRVDTKWKEGRDIWWQDVIPQYPTTCPVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVYTATTFKYAFDYKPSDIYWCTADCGWITGHSYVTYGPMLNGASVIVYEGAPNYPDAGRCWDIVDKYKVTIFYTAPTLVRSLMRDGDAFVTRYSRKSLRVLGSVGEPINPSAWRWFYNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCVKKSWPGAFRTLYGDHERYETTYFKPFAGYYFSGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESAIVSHPQCAEAAVVGVEHEVKGQGIYAFVTVVDGVPYSEELRKDLILTVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASRQLDELGDTSTLADPNVVNQLIELADS 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1810 689 CDD ACS 63 676 - -
Ssu4g1810 689 ProSitePatterns Putative AMP-binding domain signature. 303 314 IPR020845 -
Ssu4g1810 689 SUPERFAMILY Acetyl-CoA synthetase-like 53 684 - -
Ssu4g1810 689 Pfam AMP-binding enzyme 134 564 IPR000873 -
Ssu4g1810 689 PANTHER ACETYL-COENZYME A SYNTHETASE 24 689 - -
Ssu4g1810 689 Pfam AMP-binding enzyme C-terminal domain 573 651 IPR025110 -
Ssu4g1810 689 Gene3D - 45 559 IPR042099 -
Ssu4g1810 689 TIGRFAM Ac_CoA_lig_AcsA: acetate--CoA ligase 60 685 IPR011904 GO:0003987|GO:0016208|GO:0019427
Ssu4g1810 689 Pfam Acetyl-coenzyme A synthetase N-terminus 65 125 IPR032387 -
Ssu4g1810 689 Gene3D - 560 689 IPR045851 -
Ssu4g1810 689 PANTHER ACETYL-COENZYME A SYNTHETASE 24 689 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1810 Ssu-Chr4 32916787 32923650 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1810 7 688 Acyl Lipid Metabolism Gene Families AT5G36880 82.055 0.0 1213
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1810 K01895 - gmx:100808939 1380.16
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1810 4 32916787 32923650 Ssu4g1810 4 32916787 32923650 ECH